KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4344686
Entry
4344686           CDS       T01015                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4344686
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4344686
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4344686
   03041 Spliceosome [BR:osa03041]
    4344686
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4344686
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4344686
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4344686
 Complex C
  U2 snRNP components
    4344686
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF1256 DUF150_C
Other DBs
NCBI-GeneID: 4344686
NCBI-ProteinID: XP_015650113
UniProt: Q0J7Y5 A0A0P0XBT0
LinkDB
Position
8:3146467..3150040
AA seq 93 aa
MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPQDGVDIDILHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgctgttcttctcctacttcaaggagctcgtggggaaggaggtgacggtggagctcaag
aacgacctggccatccgcggcacgctccactccgtcgaccaatacctcaacatcaagctc
gagaacactcgggttgtcgaccaggacaagtacccgcacatgctatccgtgcgaaactgc
ttcatcaggggatcggtggtgcggtacgtgctgcttccccaggatggcgtcgacattgac
atcctccatgatgccaccaggagggaggctcgcggaggctga

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