Oryza sativa japonica (Japanese rice): 4344686
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Entry
4344686 CDS
T01015
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4344686
09123 Folding, sorting and degradation
03018 RNA degradation
4344686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4344686
03041 Spliceosome [BR:
osa03041
]
4344686
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4344686
mRNA degradation factors
5'-3' decay
Lsm complex
4344686
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
4344686
Complex C
U2 snRNP components
4344686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
DUF1256
DUF150_C
Motif
Other DBs
NCBI-GeneID:
4344686
NCBI-ProteinID:
XP_015650113
UniProt:
Q0J7Y5
A0A0P0XBT0
LinkDB
All DBs
Position
8:join(3160643..3160645,3160775..3160933,3163308..3163427)
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AA seq
93 aa
AA seq
DB search
MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPQDGVDIDILHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcttctcctacttcaaggagctcgtggggaaggaggtgacggtggagctcaag
aacgacctggccatccgcggcacgctccactccgtcgaccaatacctcaacatcaagctc
gagaacactcgggttgtcgaccaggacaagtacccgcacatgctatccgtgcgaaactgc
ttcatcaggggatcggtggtgcggtacgtgctgcttccccaggatggcgtcgacattgac
atcctccatgatgccaccaggagggaggctcgcggaggctga
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