Oryza sativa japonica (Japanese rice) (RefSeq): 4344703
Help
Entry
4344703 CDS
T01015
Name
(RefSeq) protein LHY isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4344703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4344703
Transcription factors [BR:
osa03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
4344703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
4344703
NCBI-ProteinID:
XP_015649835
UniProt:
Q6ZD85
LinkDB
All DBs
Position
8:3360845..3373396
Genome browser
AA seq
725 aa
AA seq
DB search
MEINSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQ
IRSHAQKFFTKLEKEAINNGTSPGQAHDIDIPPPRPKRKPNSPYPRKSCLSSETSTREVQ
NDKATISNMTNNSTAQMAGDAALEKLTYIQKLQRKEISEKGSCSEVLNLFREVPSASFSS
VNKSSSNHGASRGLEPTKTEVKDVVILERDSISNGAGKDAKDINDQEMERLNGIHISSKP
DHSHENCLDTSSQQFKPKSNSVETTYVDWSAAKASHYQMDRNGVTGFQATGTEGSHPDQT
SDQMGGASGTMNQCIHPTLPVDPKFDGNAAAQPFPHNYAAFAPMMQCHCNQDAYRSFANM
SSTFSSMLVSTLLSNPAIHAAARLAASYWPTVDGNTPDPNQENLSESAQGSHAGSPPNMA
SIVTATVAAASAWWATQGLLPLFPPPIAFPFVPAPSAPFSTADVQRAQEKDIDCPMDNAQ
KELQETRKQDNFEAMKVIVSSETDESGKGEVSLHTELKISPADKADTKPAAGAETSDVFG
NKKKQDRSSCGSNTPSSSDIEADNAPENQEKANDKAKQASCSNSSAGDNNHRRFRSSAST
SDSWKEVSEEGRLAFDALFSRERLPQSFSPPQVEGSKEISKEEEDEVTTVTVDLNKNAAI
IDQELDTADEPRASFPNELSNLKLKSRRTGFKPYKRCSVEAKENRVPASDEVGTKRIRLE
SEAST
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggagattaattcctctggtgaggaagcggtggtaaaggtgaggaagccatacacaatc
acaaagcagagggagcgttggactgaggcagagcacaacaggttccttgaagccttgaaa
ctgtatgggagagcctggcagcgcatagaagagcatgttgggacaaagacagctgtgcag
atcagaagtcatgctcaaaagttcttcaccaagttggaaaaggaagctatcaacaatggc
acttctccaggacaagctcatgacatcgacatacctccaccacgaccaaaaagaaaacct
aacagtccatatcctcgaaaaagttgtctcagctctgagacatccaccagggaagttcaa
aatgataaggcaacaatatcaaatatgacgaacaatagcactgcacaaatggcaggtgat
gcagctcttgagaaactcacttacattcagaaacttcaaagaaaggagatatctgaaaaa
ggaagttgctccgaagttcttaatctctttcgagaagtcccatcggcatcattttcttca
gttaacaaaagctcttcaaatcatggtgcatccagggggctggaaccgactaaaacagaa
gtcaaagatgtggtcatcttggaaagggattctatttccaatggtgcagggaaggatgca
aaagatatcaatgatcaagaaatggaaaggctcaatgggatacacatcagctcgaagcct
gatcattctcatgaaaactgtttggatacctcaagccaacaatttaagccaaaatcaaac
tctgtggagacaacatatgtggattggtctgctgcaaaagcttcacactaccaaatggac
agaaatggggttactggctttcaagccactggaactgaaggaagccatcctgatcaaaca
agtgatcaaatgggaggagccagcggaactatgaatcaatgcatccatccaacacttcct
gtggatccaaaattcgacggcaatgccgcagcacagccctttcctcacaactatgcagcc
tttgcaccaatgatgcaatgccactgcaaccaagatgcctacagatcttttgccaatatg
tcatccaccttctccagcatgcttgtctccacattgttgtcaaaccctgcaatccatgca
gctgccaggcttgcagcatcgtactggcctacagtagacggcaatactcctgatccaaat
caagaaaatctttctgagagtgctcaaggaagccacgctggctctcctcccaacatggca
tctattgtcacagctacagttgctgcagcatcagcatggtgggcaacacaaggtcttctc
cctctttttcctccacctatagcttttccatttgttccagctcctagtgctcccttttcc
acagcagatgttcagcgagctcaagagaaagatatagactgcccaatggataatgcacag
aaggaattgcaagaaactcggaaacaagataattttgaagctatgaaggtcatagtgtct
tcagagactgatgagagtggaaaaggagaagtgtcgctccacactgagttaaagatatct
ccagcagataaggccgacaccaaacctgccgcaggagctgaaacaagtgacgtttttgga
aataagaaaaagcaggatcgctcttcatgtggttccaacacaccgtcaagtagtgatata
gaagcagataatgctcctgagaatcaagaaaaggctaacgacaaggcaaagcaagcatct
tgcagtaactcttcagccggtgacaataaccaccgtagatttaggagcagtgcaagcaca
agtgattcatggaaggaagtttctgaagagggtcgtctggcttttgatgcactgttcagt
agagaaaggcttccccaaagcttttctcctccgcaagtagaaggatcaaaggagattagc
aaggaggaagaagatgaagtaaccacggtgacggttgacctcaacaagaatgccgctatt
attgatcaagaactcgacacagcggatgagccaagagcttcctttcctaatgaattgtca
aacctgaagctgaaatctcgcaggaccggtttcaaaccatacaagaggtgctcagtggaa
gcgaaggagaacagggtaccggctagcgatgaggttggtaccaagaggattcgtcttgag
agcgaagcatcgacatga
DBGET
integrated database retrieval system
