KEGG   Oryza sativa japonica (Japanese rice): 4344703
Entry
4344703           CDS       T01015                                 
Symbol
CCA1, COC1, LHY, OsCCA1, OsJ_26106, OsLHY
Name
(RefSeq) protein CCA1
  KO
K12133  MYB-related transcription factor LHY
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    4344703 (CCA1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:osa03000]
    4344703 (CCA1)
Transcription factors [BR:osa03000]
 Eukaryotic type
  Helix-turn-helix
   Tryptophan clusters Myb, Myb-factors
    4344703 (CCA1)
SSDB
Motif
Pfam: Myb_DNA-binding Myb_DNA-bind_7 Myb_DNA-bind_6
Other DBs
NCBI-GeneID: 4344703
NCBI-ProteinID: NP_001409371
LinkDB
Position
8:join(3413310..3413348,3413421..3413532,3413716..3413777,3417724..3417942,3418050..3419429,3419520..3419867)
AA seq 719 aa
MEINSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQ
IRSHAQKFFTKLEKEAINNGTSPGQAHDIDIPPPRPKRKPNSPYPRKSCLSSETSTREVQ
NDKATISNMTNNSTAQMAGDAALEKLQRKEISEKGSCSEVLNLFREVPSASFSSVNKSSS
NHGASRGLEPTKTEVKDVVILERDSISNGAGKDAKDINDQEMERLNGIHISSKPDHSHEN
CLDTSSQQFKPKSNSVETTYVDWSAAKASHYQMDRNGVTGFQATGTEGSHPDQTSDQMGG
ASGTMNQCIHPTLPVDPKFDGNAAAQPFPHNYAAFAPMMQCHCNQDAYRSFANMSSTFSS
MLVSTLLSNPAIHAAARLAASYWPTVDGNTPDPNQENLSESAQGSHAGSPPNMASIVTAT
VAAASAWWATQGLLPLFPPPIAFPFVPAPSAPFSTADVQRAQEKDIDCPMDNAQKELQET
RKQDNFEAMKVIVSSETDESGKGEVSLHTELKISPADKADTKPAAGAETSDVFGNKKKQD
RSSCGSNTPSSSDIEADNAPENQEKANDKAKQASCSNSSAGDNNHRRFRSSASTSDSWKE
VSEEGRLAFDALFSRERLPQSFSPPQVEGSKEISKEEEDEVTTVTVDLNKNAAIIDQELD
TADEPRASFPNELSNLKLKSRRTGFKPYKRCSVEAKENRVPASDEVGTKRIRLESEAST
NT seq 2160 nt   +upstreamnt  +downstreamnt
atggagattaattcctctggtgaggaagcggtggtaaaggtgaggaagccatacacaatc
acaaagcagagggagcgttggactgaggcagagcacaacaggttccttgaagccttgaaa
ctgtatgggagagcctggcagcgcatagaagagcatgttgggacaaagacagctgtgcag
atcagaagtcatgctcaaaagttcttcaccaagttggaaaaggaagctatcaacaatggc
acttctccaggacaagctcatgacatcgacatacctccaccacgaccaaaaagaaaacct
aacagtccatatcctcgaaaaagttgtctcagctctgagacatccaccagggaagttcaa
aatgataaggcaacaatatcaaatatgacgaacaatagcactgcacaaatggcaggtgat
gcagctcttgagaaacttcaaagaaaggagatatctgaaaaaggaagttgctccgaagtt
cttaatctctttcgagaagtcccatcggcatcattttcttcagttaacaaaagctcttca
aatcatggtgcatccagggggctggaaccgactaaaacagaagtcaaagatgtggtcatc
ttggaaagggattctatttccaatggtgcagggaaggatgcaaaagatatcaatgatcaa
gaaatggaaaggctcaatgggatacacatcagctcgaagcctgatcattctcatgaaaac
tgtttggatacctcaagccaacaatttaagccaaaatcaaactctgtggagacaacatat
gtggattggtctgctgcaaaagcttcacactaccaaatggacagaaatggggttactggc
tttcaagccactggaactgaaggaagccatcctgatcaaacaagtgatcaaatgggagga
gccagcggaactatgaatcaatgcatccatccaacacttcctgtggatccaaaattcgac
ggcaatgccgcagcacagccctttcctcacaactatgcagcctttgcaccaatgatgcaa
tgccactgcaaccaagatgcctacagatcttttgccaatatgtcatccaccttctccagc
atgcttgtctccacattgttgtcaaaccctgcaatccatgcagctgccaggcttgcagca
tcgtactggcctacagtagacggcaatactcctgatccaaatcaagaaaatctttctgag
agtgctcaaggaagccacgctggctctcctcccaacatggcatctattgtcacagctaca
gttgctgcagcatcagcatggtgggcaacacaaggtcttctccctctttttcctccacct
atagcttttccatttgttccagctcctagtgctcccttttccacagcagatgttcagcga
gctcaagagaaagatatagactgcccaatggataatgcacagaaggaattgcaagaaact
cggaaacaagataattttgaagctatgaaggtcatagtgtcttcagagactgatgagagt
ggaaaaggagaagtgtcgctccacactgagttaaagatatctccagcagataaggccgac
accaaacctgccgcaggagctgaaacaagtgacgtttttggaaataagaaaaagcaggat
cgctcttcatgtggttccaacacaccgtcaagtagtgatatagaagcagataatgctcct
gagaatcaagaaaaggctaacgacaaggcaaagcaagcatcttgcagtaactcttcagcc
ggtgacaataaccaccgtagatttaggagcagtgcaagcacaagtgattcatggaaggaa
gtttctgaagagggtcgtctggcttttgatgcactgttcagtagagaaaggcttccccaa
agcttttctcctccgcaagtagaaggatcaaaggagattagcaaggaggaagaagatgaa
gtaaccacggtgacggttgacctcaacaagaatgccgctattattgatcaagaactcgac
acagcggatgagccaagagcttcctttcctaatgaattgtcaaacctgaagctgaaatct
cgcaggaccggtttcaaaccatacaagaggtgctcagtggaagcgaaggagaacagggta
ccggctagcgatgaggttggtaccaagaggattcgtcttgagagcgaagcatcgacatga

DBGET integrated database retrieval system