Oryza sativa japonica (Japanese rice): 4344716
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Entry
4344716 CDS
T01015
Symbol
OsJ_26125
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4344716 (OsJ_26125)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4344716 (OsJ_26125)
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4344716 (OsJ_26125)
Spliceosome [BR:
osa03041
]
Complex A
U2 snRNP components
U2 related factors
4344716 (OsJ_26125)
Complex B
4344716 (OsJ_26125)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
4344716
NCBI-ProteinID:
NP_001409373
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All DBs
Position
8:complement(3562345..3565494)
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AA seq
1049 aa
AA seq
DB search
MGSSDEAGSSKHHRRDKEKDRERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDRDRERR
HREKERDREERKAREREEREKEKERERARRREERDREERSRRREAAAEEEEEDVDRDRKR
RRRSSHHHHHHRDAEPEGPASGAREEEVVDVEEAERRRQKKKEEEQKQLDEEMETRRRRI
KEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDEEGNQE
DGKKSDDNGGSGAGAMDVDVPNGGDNANGANAMDEDEIDPLDAFMNSMVLPEVAKLESMP
AANVDDKNDKSAKDAVTNGDKKGPKKVMGRIIQGEDSDSDYADDEDDEGGSEDEDDEEFM
KRVKKTKAEKLAIVDHSKIDYQPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVP
KPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVL
PMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQ
ISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQ
NTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFR
LLELLGEWFDKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSN
VCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEE
RYAPDLVKALELSEQAVPEDLKGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARK
SAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIAAAQAAAAMVAAKAASNANQQ
TQGTSVGPLLPLAIASNTQNNEATARALQAAFNIQQNLARIQAHAVPEHYEAELEINDFP
QNARWKITHKETLGPIQEWTGAAITTRGTFFPQGKIVGANERKLYLFIEGPTELSVKKAK
AELKRVLEDCANHALNLPGSAQTGKYSVI
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggggtctagcgacgaggccggctcctccaagcaccaccgccgcgacaaggagaaggac
cgcgagcggtcctcctcccgccaccaccgcgaccgcgaccgcgagagatcctcctctcgc
caccaccaccgcgaggaccgggatgacgaccgggatcgggaccgggaccgggagcgccgc
cacagggagaaggagcgggatcgcgaggagcggaaggcgcgggagcgggaggagcgggag
aaggagaaggagagggagcgtgcgcggcggcgcgaggagagggaccgcgaggagaggtcg
aggaggcgggaggcggcggcggaggaggaggaggaggatgtggaccgcgaccgcaagcgc
cgccgccggtcgtcgcaccaccaccaccaccaccgcgacgcggagccggaggggccggct
tcgggggccagggaggaggaggtggtggatgtggaggaggccgagaggcggcgccagaag
aagaaggaggaggagcagaagcagctggacgaagagatggagacgcggcgccgccgcatc
aaggagtggcaggagatgaagcgccgcgaggaggagacgaagcgccgcgagcaggaggag
gccggagttggcacctcagccgccgccgccgcggcccccgcagaagcagaagatggcggc
aatgccgggaagaagtggaccttggatggcgaggagtctgatgaggaggggaaccaagag
gatggtaagaaatccgatgataatggtggttctggtgccggtgccatggacgttgatgtt
ccaaatgggggtgataatgcaaacggcgccaatgctatggatgaagatgagattgatccg
cttgatgcgttcatgaactcgatggtattgcctgaggtcgcaaagcttgagagcatgcct
gctgccaatgtggatgacaagaatgataagagtgctaaggatgctgtgactaatggggat
aaaaaggggccaaagaaggtgatggggagaattatacaaggagaagactcagactcggat
tatgcagatgacgaggatgatgagggtggttccgaagatgaggatgatgaggagttcatg
aaacgtgtcaagaagacaaaggcagaaaagttggctattgttgaccattctaagatcgac
taccagccgttccggaagaatttctacattgaggtgaaggatattacaaagatggcagct
gaggaagtggcagcttatcggaagcagttggagctcaaggtgcatgggaaagatgtaccc
aagccaataaagacatgggtgcagagtgggcttaccagcaagctccttgatacaatcaag
aaacttggtttcgagaaaccgatgtctatacaggcacaagcactgccgatcataatgagt
gggcgtgattgtataggaattgcaaagactggatcaggcaagactctagcatttgtcctg
cctatgctgaggcatgtcaaagatcagccggctgttgttcctggagatggcccaattggg
cttataatggctcctactagagagcttgtggtgcagatacattcagacattaagaagttt
tcgaaggcgcttggcatcaactgtgttgctatctatggaggttctggagttgcccagcag
atcagtgaactgaagaggggtgctgaaattgttgtttgtacaccaggcaggatgattgat
attctttgcacaagcagtgggaagattactaatcttcggagagttacattcttggtgatg
gatgaagctgataggatgtttgatatgggttttgagcctcagattactcggatagttcag
aatactcgtccagataggcagacagttcttttctcagccacttttccacgtcaggtggag
atactggcccgtaaggtgctgacaaagcctgttgagatccaggtgggtgggaggagtgtc
gtcaacaaagatatcacacaactggttgaggtgcggccagaaaatgagaggttctttagg
ctgttggagctgcttggagagtggtttgataaaggtaaaattcttgtttttgtccattca
caagataaatgtgattctctactcaaagacctgttccagcatggatatccatgcctatcc
ctgcatggtgggaaagaccagactgaccgtgaatcaacactagctgatttcaagagcaat
gtgtgcagcttgctgattgctaccagtgttgctgctaggggtttagatgtcaaggagctt
gagcttgttgtgaattatgatgtcccgaaccactatgaggattatgttcatcgtgttgga
cgaactggacgtgctgggaggaagggatttgccgtgacttttatttctgaggaagaggag
cgttatgctccagaccttgttaaagctttggagctctcagagcaggctgttccagaggac
ctgaaaggtctagctgatcgttttatggcaaaggtgaagcagggaacagagcaggcccat
ggaacaggatatggtggaagcggtttcaagttcaatgaagaggaggatgaagcacggaaa
tctgcaaagaaggctcaggcaagggaatatggttatgaggaggacaagtcagattcagat
tctgatgaggaaggaggggttcgtaaggcgggaggtgaccttgcggcacaagctattgct
gctgctcaagctgctgctgctatggttgcagcaaaggctgctagcaatgccaaccagcaa
acacaaggcacttctgtagggcccttgcttcctctagccattgcttcaaacacacagaat
aacgaggccacagcacgtgcactgcaggctgcatttaacatacagcaaaatctggcaagg
atacaagcacatgcagtcccagaacattatgaggctgagcttgagattaatgatttccca
caaaatgcccgctggaagatcactcacaaagaaacattgggtcctatccaggaatggacg
ggtgctgcaatcactacaaggggaaccttttttcctcaaggaaaaattgttggtgctaat
gaacgcaagctgtacctgttcatagagggccccactgagctatctgtcaagaaggcgaaa
gcagaattgaagcgtgtccttgaagattgtgccaaccatgctctgaaccttcctggttct
gcccaaactggaaagtactctgttatttga
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