Oryza sativa japonica (Japanese rice): 4344738
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Entry
4344738 CDS
T01015
Name
(RefSeq) RNA polymerase sigma factor SigA-like
KO
K03086
RNA polymerase primary sigma factor
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4344738
Transcription machinery [BR:
osa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
4344738
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
VIR_N
Mito_fiss_reg
Motif
Other DBs
NCBI-GeneID:
4344738
NCBI-ProteinID:
XP_015648214
UniProt:
Q0J7T6
LinkDB
All DBs
Position
8:join(3779761..3780485,3780819..3781017,3781156..3781248,3781370..3781498,3781814..3781867,3781966..3782043,3782142..3782204,3782470..3782582,3782761..3782869)
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AA seq
520 aa
AA seq
DB search
MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAPPAPAT
PKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAHDLE
SSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMS
GRRRGRTKNGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQR
SKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLG
VELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHE
RLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLP
GETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWE
DISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgacgccagcggtgatcgggctgagcgcggggaacaggctgctgagcgcgtcg
ttcgggccgaccgacctgatgccggacaaggtcagcctcggcgtcggcggaggcggggga
ggaggaggaggtggtggaggtggggacgcgatgtcgttcgcgccgccggcgcccgcgacg
ccgaagctcaccgcggtcgccgcgcacaggctcaagctctccccgcatggccgcgcgcag
gtcatgcgcgcgctcaggcaccactcctccgcggcggccgcgctcgcgcccccgcccccg
cccccgcccccgccgacgccgtcgcccgcctcgcgcgccgcccacgcccatgacctcgag
tcctccctcgaggccatcgtgctgctgcagaggtccatgctcgagaagcagtgggagctc
cccttcgacgacgacaaccacgccatggccatcggcttggccgaggatgacgacgacacc
agcaaggccaccgtcgtcgtggcgcggtccagtgtctcggcgcggcagaggaggatgagc
gggcggcggcgggggaggaccaagaacggcgcggcgcacttcgccgtcagccccgagctg
atccagagcaggaacaggatctacctcaggggcaccgtcagcaaggagctcctcacgcac
aagcaggtcgtccacctctcccacaagatcaaggatggcatctggctgcagcagcaaaga
tcaaagctgaaagagaagctgggaaatgagccctcatacaaacagctggcgcattcgctg
aagatatcaccgcccgagctacgatcaaggatgcacgagtcgtttcttgcaagggagatg
ctaacaatgagcaacctccgtttggtcatttccattgcccagaagtatgataaccttggt
gttgagttggctgacctcattcagggtggtctgatagggttactccgtgggatcgaaaaa
tttgatgcatccaggggctttagaatttccacttatgtatactggtggatacgccagggt
gtttcaagagcattagctgaaaactcaaaaacattcaggcttccaacttatctgcacgag
cggctgattgcgattcgtggtgcaaagtatgagttggaagatcaaggaattgctccaaca
atagaaaacatagcagggtcactcaacatatcagaaaagaaagtactcaatgctacagag
gctgtgaacaaggttctttcgttggatcaacaagcatttccatccttaaacggcttacct
ggagagacactgcacagttacatagaggatcaaaatgtcgcaaatgatccatggcatgga
tttgaggagtggtatctcaaggaagaagtcaacaagcttttaaactcaactctcaacgag
cgtgagagggacattatccggttatatcatggcataggaaaacaatgccatacatgggag
gatattagcagacaattcgggttgtcgagggagagggtgaggcaagtaggactcatcgca
atggagaagctgaagcatgctgcgaggaggaaaaatttggaggcattgcttgaggattat
tga
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integrated database retrieval system
