| Entry |
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| Name |
(RefSeq) DNA polymerase I B, mitochondrial isoform 1
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| KO |
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| Organism |
osa Oryza sativa japonica (Japanese rice)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4344791
03410 Base excision repair
4344791
03420 Nucleotide excision repair
4344791
03440 Homologous recombination
4344791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:osa03032]
4344791
03400 DNA repair and recombination proteins [BR:osa03400]
4344791
Enzymes [BR:osa01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
4344791
DNA replication proteins [BR:osa03032]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
4344791
DNA repair and recombination proteins [BR:osa03400]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
4344791
NER (nucleotide excision repair)
GGR (global genome repair) factors
4344791
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
8:complement(join(4456535..4456696,4456923..4457012,4457093..4457305,4457484..4457576,4458116..4458310,4458402..4458494,4459313..4459408,4459945..4460392,4460837..4461504,4464409..4464606,4465024..4465741,4466206..4466339))
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| AA seq |
1035 aa
MAVAPPLPPAPARLLRRWQGSSPWLSSSFGRTRYFSRPAFAAGGRQDYSPSSGMGVSKTG
AFRLGLHGNLNVQSSVQEWVDETKRLFFLRTTNNVRNNITNGTTPLRVGNLRHDPSEDIR
SSNYPSLYNQRERGPSNSIVNRHVDTDLAKHRVMYQSAHAVPAPFSVANNDIKPLNLLDG
SKEEIPWHDSVTVESSLPKVSKSETTLVVDKAIPNKKEHKRITRKVTLNIPDKASLSTES
KNARKLLATIYDKVLVVDNVESARSVVKLLTTKYKGFIHACDTEVANIDVKEETPVGHGE
VICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSH
VIENCGIKVAGFHADTMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSM
KTIFGRKNVRKNGSEGKTISIEPVKKLQREDRELWICYSSLDSMSTLKLYESLKNKLEAK
EWIFDGCPRGTMYDFYEEYWRPFGALLVKMETEGMFVDRAYLSEIEKTAVVERKLAADKF
RKWASKHCPDAKYMNVNSDNQIRQLFFGGIKNRNKPGETWPQSKAFKVPNDESIATEGKK
IPKSRTIKLFTIVEDLKLFTTEGKKTTKTGWLKVRGDVLWSLAGKIPTDHIYKIDDDGQE
FDEDGSSVELPEQDIEDTSPYGTAYEAFGGGKKGREACHAIAALCEVFSIDKLISGFIVP
LQGDHISCKEGRIHCSLNINTETGRLSARTPSLQNQPALEKDRYKIRQAFVAAPGNTLIV
ADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPG
QDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDRKE
ISAWQKKQKALAFEKCEVYTLLGRSRQFPNMTHAGPGQKSHVERAAINAPVQGSAADVAM
CAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKAIVVECMSKPFYGTNILKVD
LAVDAKYAKSWYAAK |
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| NT seq |
3108 nt +upstreamnt +downstreamnt
atggcggtggcgccgccgctgccgccggcaccggcgcggctgctccggcggtggcagggg
tcgtcgccgtggctgtcctcttccttcggccgcacccgctacttttcgcgcccggccttc
gccgcgggaggaaggcaagattattctcctagttctggcatgggggttagcaaaactggt
gctttcaggctgggattgcatggcaacttaaatgtacaaagtagcgtgcaagaatgggtt
gatgaaaccaagaggttatttttcctcaggaccaccaacaatgtcaggaacaacatcact
aatggcactactcctctgcgggttggaaatctgcgtcatgatccctcagaagatatcagg
agttcaaactatccttccttgtataatcaaagagaaagagggccatctaattcaattgta
aatagacatgtcgatacagatttggctaagcatcgtgtgatgtatcagtcagcacatgct
gtgcctgccccattcagtgttgctaataatgatatcaaaccactgaacctgcttgatggc
tccaaggaggaaattccttggcacgattccgttacggtggaatcttctctgcctaaagtt
tccaagtcagagacaactttggtggttgataaagctatcccaaacaaaaaggagcacaaa
cgcattacaaggaaagtgacgctaaatatcccggacaaagcttccttgtccactgagtca
aaaaatgcacggaagttgcttgctaccatctatgacaaagttttggttgtcgacaatgtt
gagtcagctaggagtgttgttaaattgcttactacaaagtacaaaggctttattcatgca
tgtgacacggaggtggcaaatattgatgtcaaagaagagacgccagttggtcatggagaa
gtaatatgctttagcatctattcaggaaattctgatggggaggctgattttggaaatggc
aaaacatgcatatgggtggatgtgctagatggtggaagggatgttctaatggagtttgct
cctttctttgaggacccatctatcaaaaaggtttggcataactatagttttgatagccat
gtcattgagaactgtggaatcaaggttgctggatttcatgctgatacaatgcatcttgca
cgcctgtgggattcttccaggagagctgatggtggatattcacttgaaggactaacaaat
gatcacagaatcatgaatgctgttctaaaggacatacataaaactgggaaggtgtcaatg
aaaactatttttggtcggaaaaatgttagaaaaaatggatctgaagggaaaaccatatct
atcgagccagtcaaaaagttacaaagggaggatagagagttgtggatttgctattcctca
ctagattcaatgagtacattgaagctttatgaaagcttgaaaaacaagcttgaagcaaag
gaatggattttcgatggttgtcctagaggaacaatgtatgatttctacgaagagtattgg
cgtccctttggtgctcttcttgtaaagatggaaacagagggaatgtttgttgaccgtgca
tacctttcggagattgagaaaactgctgttgttgaacgaaaattagcagcggataagttt
cggaaatgggcatctaagcattgtcctgatgccaagtacatgaatgtgaatagtgataat
caaattcgccaacttttctttggtggcatcaaaaatagaaataagcctggtgaaacttgg
ccacaaagtaaagcttttaaagtgccaaatgatgaaagcatagctacagagggcaagaag
attccaaagtctcgcacaatcaaacttttcactattgtggaagatcttaaacttttcact
acagagggcaagaagactacaaagactggctggcttaaagtccgtggggacgttttatgg
agtttggctggtaaaatacccacagatcatatatataaaattgatgatgatggccaagag
tttgatgaagatgggagcagtgtggaacttcctgagcaggatatagaagacacttcccca
tatggaactgcatatgaagcgtttggtggaggaaagaagggaagggaagcatgtcatgcc
attgctgctctatgtgaagtcttttctattgacaaattgatatccggcttcattgttcca
ttgcagggagatcatatatcatgtaaggaagggcgcattcactgttcgttaaatatcaat
actgaaacaggacgcttgtcagcaagaacaccaagcttgcagaatcaacctgctcttgaa
aaggataggtacaagattcgccaagcttttgtcgcagctccagggaacactcttattgtt
gctgattatggccaactggaactgaggatcttggcgcatcttactaattgtaaaagcatg
ctggaagctttcaaggctggtggtgactttcattctaggacagccatgaatatgtaccag
catgttcgtgatgctgttgaagaaaagaaagttctgcttgaatggcatcctcaaccaggt
caagacaaacccccagtgccattattgaaggatgcttttggcgctgagaggaggaaggcc
aaaatgctcaatttctccattgcatatgggaagactgctgttggtctatctcaggattgg
aatgttgaagttagggaagcaagggatacactcaaactttggcatagggatagaaaggaa
atttcagcttggcaaaagaagcagaaagcccttgcgtttgagaagtgcgaagtctacact
ttgctcgggcgatcacgccaatttcctaatatgactcatgcgggtcctggtcaaaagagt
cacgtcgagcgtgctgctataaatgcaccagtgcagggcagtgcagcagatgttgctatg
tgtgcaatgcttgagatagaaagaaacgctcgccttaaggagcttggttggagactccta
ttgcaggtgcatgatgaagtgatcttggaagggcctacagaatctgccgaggaggccaag
gccatcgttgtggagtgcatgtccaagcctttctatggaaccaacatcctcaaggttgac
ctagctgtcgacgccaagtacgcgaagagctggtatgctgccaagtag |
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