Oryza sativa japonica (Japanese rice): 4344798
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Entry
4344798 CDS
T01015
Name
(RefSeq) protein RAE1
KO
K14298
mRNA export factor
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4344798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4344798
03036 Chromosome and associated proteins [BR:
osa03036
]
4344798
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
4344798
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
4344798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_EML
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF12
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_LRRK2
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
4344798
NCBI-ProteinID:
XP_015651125
UniProt:
A0A0P0XCI0
Q6ZBS9
LinkDB
All DBs
Position
8:complement(join(4546614..4546661,4546751..4546831,4547511..4547582,4548055..4548132,4549075..4549203,4549621..4549701,4549823..4549964,4550431..4550624,4550721..4550786,4550867..4550953,4551085..4551135))
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AA seq
342 aa
AA seq
DB search
MATLGLAPNMNPNKSFEVLPNPGDSVSSLSFSPKSNLLVATSWDNQVRCWEIVGGSSQPK
ASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAQTVAMHDAPVKEIAWIPQM
NLLVSGSWDKTLRYWDTRQSNPVHVQQLPERCYALTVNYPLMIVGTADRNLVVFNLQNPQ
TEFKRIQSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHIDDSQQSKNFTFKCHREGNDI
FSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAFSRCPLPIPCSTFNSDGSIFAYA
VCYDWSRGAENHNPATAKTSIYLHSPQESEVKGKPRIATSRK
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcgactcttggtcttgccccaaacatgaatccaaacaagtcatttgaggtactgcct
aatccaggtgactccgtatcgagcctcagttttagcccaaagagcaaccttctggtggca
acttcctgggataaccaggtgcggtgctgggagattgttggtgggagtagtcaaccaaag
gcatctatatcgcatgaccagccagtcctctgttcagcttggaaggatgatggaactact
gtgttctctggaggctgtgataaacaagtaaaaatgtggcctctgttgtctggtgggcag
gctcagactgttgcaatgcatgacgcacctgtcaaggagatcgcttggattcctcaaatg
aatcttcttgtctctggaagctgggataagactctaaggtattgggacacaaggcaatca
aatcctgtccatgttcagcaacttcctgagcgctgttacgcacttacagtgaattatccc
cttatgattgtgggaactgctgatcgtaatctggtcgtcttcaacttgcagaatcctcag
acggagttcaagcgcatccaatcgccactcaaataccagactaggtgtcttgctgcattc
ccggatcaacaaggatttttggtgggttccatagaaggaagagttggtgtgcatcatatt
gatgactcacagcaaagcaaaaatttcacgttcaaatgtcacagggaagggaatgatatt
ttctctgtcaattcactcaattttcacccagttcatcacacgtttgcaactgctggatca
gatggcgcatttaatttctgggataaggatagcaaacaaagactgaaggcttttagtcgg
tgccctcttcctattccttgcagtaccttcaacagtgatgggtcgatatttgcttatgca
gtctgctatgactggagccgtggggctgaaaaccacaaccctgccactgcaaagacatcc
atctatcttcacagtccacaggaatctgaggttaaagggaagccgagaatcgcaacaagt
agaaagtga
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