Oryza sativa japonica (Japanese rice): 4344803
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Entry
4344803 CDS
T01015
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4344803
09123 Folding, sorting and degradation
03018 RNA degradation
4344803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4344803
03041 Spliceosome [BR:
osa03041
]
4344803
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4344803
mRNA degradation factors
5'-3' decay
Lsm complex
4344803
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
4344803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
4344803
NCBI-ProteinID:
XP_015649738
UniProt:
Q6ZBS1
LinkDB
All DBs
Position
8:join(4612350..4612352,4612475..4612556,4613865..4613936,4614300..4614352,4614762..4614848)
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AA seq
98 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKL
SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFQSDGA
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggcgcaaggagacggtgctggacctggccaagttcgtcgacaagggcgtccag
gtcaagctcaccggcggcaggcaagttacagggactttgaagggctatgaccagcttcta
aacttggtgcttgatgaagcggttgaatttgaaagagagcaagatgatccattgaaacta
tcagggaaaaccagacagcttggtcttattgtctgtaggggtacagcggtgatgcttgta
tcgccaaccgatggaacggacgagattgccaaccccttccaatctgatggtgcataa
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