Oryza sativa japonica (Japanese rice): 4344833
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Entry
4344833 CDS
T01015
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4344833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4344833
03019 Messenger RNA biogenesis [BR:
osa03019
]
4344833
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
4344833
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
4344833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
4344833
NCBI-ProteinID:
NP_001409397
LinkDB
All DBs
Position
8:complement(join(5171199..5171714,5171817..5172746,5173461..5174177,5176193..5176309,5176493..5176858,5177928..5178197))
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AA seq
971 aa
AA seq
DB search
MAAAAAVAGAGGVGHVVERFRARLREEQEEEEGGGGEVAAAAVVRVYVEVLSELTFNCKP
IITELTIIAGQHAALAARGIADAICARIAEVSADQKLPSLYLLDSIVKNIGREYVGHFAA
RLQKVFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSVLRGIEDELQFSPLENKRSATATDI
RQSESISPRLSHAIHVNPKYLEAQQQFKQSTSVHQPITRGNRQMNDVEEDQINGLTSKSS
RGWPATNSKLQKSTMLYADDLDQQEAFCSHTGLIRPSSPHLLSKHPSILNTEGPLANSRR
TMSRSPPLDVLPRNASPKRALERPPLSHSVLGPDPRRLPDRNGWFERKWAFEDGAQRPSM
SILDEEYRKQSARELIDAYGNSQGKDVDERLPKMQRLDSNGMAGRPSAQKWLTSEEEEYT
WEDMSPTLTDRNRTSVPSLPPLGTLRAGFLGPNSGLLESDIVRHSWPGQAPRPAIDGPPL
NLEDRIPTNGPVDRTNNRRYPGNFGVQNGAFLDYQSSEHTLDPGRTTMPVPPWQQTIGQP
LRVQAPQPASILNRMPLPTDSEVPVKRLATGGTYDALNVDIPLLEKQRSSPAHAPMEWPL
NTQSLTIQPIPPDTKHPRGASDGLDSRPFISQGSSSSVFVPQHHALDRRTMNADDLAQPS
YQHPDLLSLSQQNQGTVLGNQGQPHHPPQFHPHPHSHLQETIRSFAPSMSVAPPQNIFHG
QGGSAAALLPSSFPVPPAVPPYGLQSMPGFPLPSLPSGPPPPSQIGPSSSQVGGPPLVSG
LLSNLMQHGIISLQPPSQPQDSVGVDFNVDLKVRNESVINALYQDLPRQCKTCGLRFKCQ
EEHRAHMDWHVTKNRNSKNRKQTSRKYFVTVGEWLRAAETVGNDGVPSFEPAEPVADAKE
EKELAVPADEDQTTCALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIGGLERSQLGPIV
HAKCLSGPNNT
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcggttgcgggggcgggcggggtggggcacgtggtggagaggttc
agggcgaggctgcgggaggagcaggaggaggaggaggggggaggcggggaggtggcggcg
gcggcggtggtgcgggtgtacgtggaggtgctctcggagctcacgttcaactgcaagccc
atcatcaccgagctcaccatcatcgccgggcagcacgcggccctcgccgcgagggggatc
gccgacgccatctgcgcccgcatcgcggaggtgtctgccgaccagaaattaccatctttg
tatctgctagacagtattgtgaagaacataggacgagaatatgtagggcattttgccgct
aggttgcagaaggtattttgtgatgcctataggaaagttcaccgcaatcagcatgctgca
atgcgacacctctttggtacctggtcacaagtgttcccttcctctgtgctacgcggaatt
gaggatgagcttcagttttcccccttagagaataagcgctctgccacagcgactgatatc
cgacagtcagagtcgatatctcctagactgtctcatgccattcatgtaaatccaaaatat
ttagaagcacaacaacaatttaagcagtcaacttcggtgcatcaaccaataactcgtgga
aatcggcaaatgaatgatgtggaagaggatcaaataaatggtttaacatctaaaagttcg
cgaggatggcctgcaactaattcaaagctccagaagtctactatgctgtatgctgacgat
cttgatcaacaagaggcattttgttcacatactgggttgataaggccaagttcgccacat
cttttaagcaaacatccttccatactcaatacagaaggaccattagccaattcaagaaga
accatgtcaagatcaccacctcttgatgtgctccctagaaatgcatcccccaagagagct
ctggagaggccaccactatcgcattctgttctaggacctgaccccagaagattgcctgat
cgaaatggttggtttgaacggaagtgggcttttgaggatggtgcacaacggccttcgatg
agcatacttgatgaagaatatagaaagcaaagtgcaagggaacttattgatgcttatgga
aattctcaaggaaaagatgtcgatgaaaggcttcccaagatgcaacgtctagattcaaat
ggcatggcaggcagacctagtgcacaaaaatggctaacttcggaggaagaagagtatact
tgggaagatatgagtcctactttaactgatcgaaacagaaccagcgtgccctctttacct
ccccttggaaccctgagagctggatttcttgggccaaacagtggactactggaatctgat
attgtgaggcacagttggccaggccaggctcctcgaccagcaattgatgggccaccacta
aatctcgaagatagaattcctactaacgggcccgttgacagaactaataacaggagatat
ccaggcaattttggtgttcagaatggtgcctttttagattaccagagttctgaacatact
cttgatcctgggagaactaccatgccagttccaccttggcagcagactattggtcagccg
ttgcgggtacaagcgccccagcctgcatcaattctgaatagaatgccactgcctactgat
agtgaagtgccagtcaagaggttggccactggtggtacatatgatgcgctgaatgtagat
attccattgttggagaagcaaaggtcctcacctgctcatgctccaatggaatggcctctt
aatacacagtcactaactatacaaccaattccacctgataccaaacatcctagaggcgca
tcagatggtctagattctagaccatttattagccaagggtccagttcgtctgtttttgtt
ccacagcatcatgccttggatcggagaacaatgaatgctgatgatttagctcaaccatca
tatcagcatccagatttgttgtcattgagtcaacaaaatcagggcacagttttgggaaac
caaggtcaacctcatcacccgccgcaatttcatccccatcctcattctcaccttcaagag
acaattagaagctttgcccccagtatgtctgttgcacctccacaaaatatattccatgga
caaggaggtagcgcagctgcactcctgccaagttctttccctgtaccacctgcagtacca
ccctatggcttgcagtctatgcctggatttcctttgccatcgttaccttcaggaccacct
cctccatcgcagataggtccatcatcatcgcaagttgggggccctccacttgtctctgga
ttgttaagtaaccttatgcagcatggtataatctcattgcaaccacccagccaacctcag
gattctgtgggtgttgacttcaatgttgacctcaaggtacggaacgagtctgtcattaat
gctctgtatcaggatcttccgaggcaatgcaaaacttgtggccttcgttttaaatgccaa
gaagaacatcgtgctcacatggattggcatgttacgaaaaacagaaattcaaagaatcgt
aagcaaacttcacgtaaatattttgtcactgtgggtgaatggttaagagcagcagaaaca
gtaggaaacgatggtgttccttcttttgagcctgccgaaccagttgcagacgcaaaggaa
gagaaagaattggctgttcctgctgatgaggaccaaacaacatgtgctttatgtcaagag
ccatttgaagatttctacagtgatgaaactgaagagtggatgtacaaaggtgcagtttat
atgaatgcaccagatggaaatattggtggtctagaaaggtcgcagttgggacctattgtc
catgctaaatgtctatctgggccaaacaatacttag
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