Oryza sativa japonica (Japanese rice): 4345188
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Entry
4345188 CDS
T01015
Name
(RefSeq) homeobox-leucine zipper protein ROC6-like isoform X1
KO
K09338
homeobox-leucine zipper protein
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4345188
Transcription factors [BR:
osa03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
4345188
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
NYD-SP28_assoc
DivIC
HTH_Tnp_1
Motif
Other DBs
NCBI-GeneID:
4345188
NCBI-ProteinID:
XP_015650915
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All DBs
Position
8:join(11781263..11781495,11781594..11781711,11781786..11782454,11782536..11782637,11782728..11782976,11783633..11783804,11783923..11784323,11784966..11785382)
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AA seq
786 aa
AA seq
DB search
MNGELKLMASYVSKLKFILQKDQQQEPHTANLLVLLGSSNQDKRNGLSQGENRMDTCTRK
KPRRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKKFK
NNEERKLLQKENEELKKENAELRNRMKNSTCRACDLPLFHIDCRHWENPMLNKGNHGVTS
NLIPQAVSSLLPSSSGFVASGSNLSSNAVLMPVSAMPSSVLQPAPAVSGANFPILHNLSA
NANDGYTEKNVLLDLANRAMEEFFSLMKENESLLVKKKENGPLWLPHMDILGVESLNYQE
YLAKSRTIGQKPVDFKVVVTRDTAIVNGSCVDLVKSLLDANRWRELFPGIVASANTTKII
STGPSNLHDGLLQLMRAELQVMSPEVPVCDVTFLRQSVQFGSGLWCVVDVSIDTILPGES
KTAQSSVQTSSTAARRMEVRLLPSGCVIEEMENGYSKVTWMVHAAYDERAVPVLYHSLLR
SAKALGACRWVASLQRHSQFLSGLHKYIFCPDSTMTEVVMRRKVLYLVKQMTSSFTGLFA
SMSKATLQDGDDTHFAHQIVGGATGEPAGLLLSATTTIWLPGVNPRHVYDHLRDEQCHGE
WRCLLGEQLHQGNALPYGAPLNGETVPEFYRMVNGLHEGHAISLISPREMGGNISNTLLL
QEARTDLSGSLIVYARTDVNTVHSIMNSGLNPATVFLVSSGCAILPDCLESFPLHPAATA
DQAGTSSAAIASRSETGGSFVTVTYQMFFSSQGGAAPASSSIHQGRDALKKATDIFKVVL
DTLTVA
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgagcttaaacttatggcttcctatgtgagcaagcttaagttcatcttgcaa
aaagatcagcagcaggagccccatactgcgaaccttctagtcctacttgggagtagcaat
caggacaaaagaaatggcctctcacagggagaaaacagaatggacacttgtaccagaaag
aagccaagaagataccaactcctcaccatgcaacaaaaagaaacgcttaatcgtgcattt
caatcatgtccgaaccctgatagaaatgacttgaagaagttggccaaggaactaaacatg
actgagacccaaatcaaatattggttccagaactgcaggacaaagatgaagaaattcaag
aacaatgaggagcgcaaactactgcagaaggagaatgaggagctaaagaaggagaatgca
gagttgagaaataggatgaagaactcaacatgccgcgcttgtgacctccctttgttccat
atagattgccgtcattgggagaatccaatgctcaacaagggtaatcatggcgttacaagt
aatctcattcctcaggcagtgtcatccttgctccccagctcaagtggttttgtagcttca
ggctccaatcttagtagcaatgctgtgctcatgcccgtatctgccatgccatcatcagtt
ttgcagcctgctccagccgtctctggtgccaattttcccatcttgcacaatctatctgcc
aatgcaaatgatggctatacggaaaaaaacgtacttcttgatctggcgaaccgtgcaatg
gaagagttctttagtctaatgaaggagaatgagtctcttcttgtcaaaaaaaaggagaat
gggcctctctggctcccacacatggatattctgggagtcgaatcacttaactaccaggaa
taccttgcaaaatccaggacgattggacaaaaacctgttgacttcaaagtggtcgtcacc
agggacactgccattgtcaatggtagctgtgttgacctcgtcaaaagccttttggatgct
aaccgctggagagagttgtttccaggcatcgtggcaagtgcaaacaccaccaagatcatc
tctactgggccctctaacttgcacgacgggttgcttcaattgatgcgtgcagagctccag
gtaatgtcacctgaagtcccagtttgcgatgtgacattcttgaggcagagtgtgcagttt
ggaagtggactgtggtgtgtggttgatgtgtctattgataccatccttcctggagagagt
aaaacagctcagtccagtgtgcagaccagcagtacagctgccagacgcatggaagtcagg
ctgttgccatcaggctgtgttattgaagaaatggagaatggctattccaaggtgacctgg
atggtgcatgcagcttatgatgagagagcagtgccagtgctttatcattcacttctccgc
tctgcaaaagcccttggtgcgtgccgctgggtagcatcactccagagacacagccagttc
ctttccggcctgcacaaatacatcttttgtcctgacagcacaatgacagaagtggtgatg
cgaagaaaagtcctgtacctggtgaagcagatgacgagcagcttcacaggcctatttgcg
tcgatgtctaaggccacgctgcaagatggtgatgatactcacttcgcgcatcagatagtt
ggtggtgcaacaggtgaacctgccggactgctgctgagcgccaccacaaccatatggctc
cccggcgtgaacccgaggcacgtgtatgaccacctgcgtgatgagcagtgccatggtgaa
tggcgctgcctcctcggtgagcagctgcatcagggcaatgccttgccgtatggtgccccc
ctgaatggtgagaccgtgccagagttctatcgcatggtgaacgggctgcatgaagggcat
gctatctccctgatcagccccagagaaatgggtggtaacataagcaacactctgctcctg
caagaggcaagaactgatctttctggctccctcatagtttacgccaggacagatgtgaac
accgtgcattccatcatgaacagtggcctcaaccctgccaccgtcttcctcgtatcctct
ggatgtgccattcttcctgattgcctggaatcattccctctacacccagctgcaactgca
gatcaggccggcacctccagtgccgctatcgctagcaggagcgaaaccggtgggtcattc
gtcaccgtcacttaccagatgtttttcagcagccaaggtggcgcagcacctgccagctca
tcaattcatcaaggccgtgatgcgctcaagaaagccaccgacattttcaaggtggtcctc
gacactctcaccgtggcatag
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