Oryza sativa japonica (Japanese rice): 4345225
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Entry
4345225 CDS
T01015
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
4345225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
4345225
Enzymes [BR:
osa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
4345225
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
4345225
DNA repair and recombination proteins [BR:
osa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
4345225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
TFIIF_alpha
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
4345225
NCBI-ProteinID:
XP_015651002
UniProt:
B9G081
LinkDB
All DBs
Position
8:join(12785620..12785848,12786932..12786983,12788704..12788761,12789537..12789605,12789697..12789822,12790139..12790189,12791696..12791773,12792546..12792648,12792727..12792761,12792849..12793295)
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AA seq
415 aa
AA seq
DB search
MPELPEVEVARRALEEHCVGKRIVRCSAADDTKVIDGVAPPRLEAALVGRTISAARRKGK
NLWLALDSPPFPSFQFGMAGAIYIKGVELSKYKRSAVSPTEEWPLKYSKLLVVMDDGLEF
SFTDKRRFAKIRFLDNPEAVPPISELGPDALFEPLHLDDFVESLSRKKAPIKALLLDQSF
ISGIGNWIADEVLYQARIHPMQTASMISKEKCKALHQCIIEVIEKSLEVGCNSSQYPENW
IFHSREKKPGKAFVEGKKIDFITVGGRTSAYVPELQKLDGIDATASRAKISKEQSKSNKA
AREVDDDEEEAKPAKRGRKQLVKATHEIQEDEEDTKESKRGRKQPAKTSKGSWKKAHHSS
EGSGDDDSDDEAVDKVVAEQGKRRDPKQPAEAKSSSDKGGSAAPAKRPQRKKRQL
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctgccggaggtggaggtggcgcgacgggcgctggaggagcactgcgtcggg
aagaggatcgtgcggtgctcggctgcagatgacaccaaggtcatcgacggcgtcgccccg
ccgcggctggaggcagcgcttgtcgggaggaccatctccgctgctcgccgcaagggcaag
aatctgtggcttgcgcttgattctccgcccttcccttccttccagttcggaatggctgga
gctatttacatcaagggtgtggaactgagcaaatacaaaaggtctgcagtgagcccgact
gaggaatggcctttgaagtattccaagctgcttgttgtaatggatgatggtttggagttt
tccttcactgataagaggcgttttgcaaaaattcgctttcttgacaatccagaagctgtc
ccaccaatttctgagcttggaccagatgccttatttgaacctcttcatcttgatgatttt
gtagagtcactaagtaggaaaaaagctccaataaaagcccttttgcttgatcagagcttt
atatcaggaattggcaattggattgcagatgaagtgctttatcaggcaaggattcatcca
atgcaaacagcatcgatgatttctaaggagaaatgcaaggcactccatcagtgcattata
gaggtgattgaaaagtccttagaagttggttgcaacagcagtcagtatccagaaaactgg
atatttcactccagggagaagaaacccggcaaggcctttgtggaggggaagaaaattgac
ttcattacagttggtggcaggacttcagcatatgtgccagagttgcagaagctggacggg
attgatgcaacagcaagcagagcgaaaataagcaaagaacagagcaaatcaaataaagct
gctcgtgaagtggacgatgatgaggaagaggctaaacctgccaagaggggaaggaagcaa
ttagtgaaggcaacccatgagatccaagaggatgaggaagatacaaaagaatcaaagaga
ggaaggaagcaaccagcaaagacatcgaagggctcgtggaagaaagctcatcattcttct
gagggtagtggtgacgacgacagtgatgatgaagcagttgataaggtggtcgcggaacaa
gggaagaggagggatccaaagcaaccagcagaggcgaaaagctcgtcagacaaaggagga
agtgctgccccagcaaagaggccacagaggaagaagcggcaattatag
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