Oryza sativa japonica (Japanese rice): 4345227
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Entry
4345227 CDS
T01015
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4345227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4345227
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
4345227
mRNA cycle factors
Common to processing body (P body) and stress granule
4345227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_17
TPR_2
Motif
Other DBs
NCBI-GeneID:
4345227
NCBI-ProteinID:
XP_015650035
UniProt:
Q0J6K0
A0A0P0XE96
LinkDB
All DBs
Position
8:complement(join(12800543..12802586,12802669..12802910,12804140..12804262,12804371..12804943,12806617..12806691))
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AA seq
1018 aa
AA seq
DB search
MMTVPMDKATASPSSRELAQRLLKKNAEHESRLRRSAQSKVPSDPNIWFQMRENYEKIIL
ADHDFSEKREIEYLLWQLHYKRIEEFRAHIVSAGKNNANPDRIKRIRSSVRSFLSEATGF
YHDLMLKIRSTYGLPLGYFSEGPDSSVVPDKDGKKVVGVKKGLLSCYRCLIYLGDLTRYK
GLYGDVDYASREYAAASIYYKEAASLCPSNGNPHHQLAILASYAGDEVTAIYRYFRSLAV
DNPFSAARENLILAFDKFHMQNHDIYAQLSGNSKVPNAKSLPSRSVGRARGRGETRFQPK
GSSTEENSKEREHSIQEILKAFYIRFVRLNGILFTRTSLETFGELSATVISDLQILLSSG
PYEELNFGVEAAENALSVVKLIAILIFTVHNANKDADNQSYAEIVQRRVLLQNAFAAAFE
FVGYLLKRCAELHDVASSIYLPAILVFIEWLACHPDFVASSEMDEKQADARSFFWSQCVP
FMNKLILTGLAHVDGDNDETCFFDMGTYEEGETGNRLALWEDVELRGFSPLVPAQGILDF
STKQGFGSDGGTKEKKARVERILAAGKALLNFVQIDQLRIYFDASSKKFLMASEPPPPAS
SVPLVVSSNAQTTNHIQQEPEVSSKIGSVAEDLGVLQSKAQLFLDGDDDEEIVFKPPVSE
KLPRVTSEQTSNELLQPVVVSDVNWSNDGAPPPMTFQSNGPVLTPNVYVQSLPISSLGWA
ANAGQHVILDVGARSTSDIFESLKAPDHNWVSTGAPLVGSLDTVPMASFSNIISDQRTPP
SSLGCFSNPDNTAILPGQDSFLLSALNNVNIGASGFLDQRVNGGLSGLQSVGNVPQVSAQ
ATMNSTNPMIGQYKHTEVTIPSAFYSVLPSVVSSDGVSKKNPVSRPGRHVGPPPGFNNAP
PKRQDDSILAGNGQHVQTNDGIWLDGYRSSLDYVNNQRFAHSNVTTASSTFTTPFPFPGK
QAFSMHPRGSDEKQWQDFHLFGPTKQLPELNFQQGNQQNGPLAEQLPAQSAWSGNYLV
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccgttccgatggataaagctactgcttccccatcatcaagggagcttgcacag
cggctcttaaagaagaacgctgaacatgaaagtcgtctgcgaaggtcagcacagtccaaa
gtgccatcagatcctaacatatggtttcagatgcgtgagaactatgaaaagataatcctt
gctgatcatgacttctctgaaaaacgtgagatagaatatcttctgtggcagttgcactac
aaaagaattgaggaattccgagctcatattgtctctgctgggaagaacaatgccaatcct
gatcggatcaagaggatcagatcttctgttagaagtttcctctcagaagcaactggtttc
tatcatgacttgatgctgaaaattcggtctacttatgggcttccgttgggctacttctct
gagggtcctgatagttctgttgttcctgataaagatgggaagaaagtggttggggtgaaa
aaaggcttgttgtcatgctatcgctgtttgatatatttaggagatcttacccgatacaaa
ggtctgtatggggatgtggattatgcaagtcgtgaatatgctgcagcctctatctactac
aaggaagcagcttcgctgtgcccttcgaatggcaacccacatcatcagcttgcaatactg
gcatcatatgctggagatgaggtaacagctatctataggtacttccgtagcttagctgtg
gataatcctttttctgcagcgagggaaaacttgattctcgcatttgacaagtttcatatg
cagaatcatgatatctatgctcagctatcaggtaatagcaaggttcccaacgctaagagc
ttgccatccagatcagttggtagggccagaggaaggggtgagacaagatttcagcccaaa
ggttctagtacagaagaaaattcaaaggagcgagagcacagtattcaagaaatactgaag
gctttctatattcgatttgttcgcctcaatggaattcttttcacaaggacaagcttggaa
acatttggggagttgtctgctacagttatcagcgatttgcaaattcttctttcatctggt
ccttacgaggagcttaattttggtgttgaggctgctgaaaacgcgctttctgttgttaag
cttattgctatccttatattcacagtgcacaatgcaaacaaagacgcagataatcaatca
tatgctgaaattgtgcaacgcagagttcttcttcaaaatgcatttgctgcagcctttgaa
tttgttggataccttctcaaaagatgcgcagagcttcatgatgttgcatcaagtatctac
ttgccagctattttggtcttcattgaatggctggcgtgccatccagattttgtggctagt
tctgagatggatgaaaagcaagccgatgcaagatctttcttctggagtcaatgcgtgcca
tttatgaataagctcattttgactggtctcgcacatgtcgatggtgataatgatgaaact
tgcttttttgacatgggcacatatgaggagggtgaaactgggaacaggcttgcgttgtgg
gaggatgttgagttaagagggttttcgcctttggtacctgctcaaggtatcttggacttc
tccaccaagcaaggttttggaagtgatggaggtaccaaggagaaaaaagcacgtgtagaa
aggattcttgctgcagggaaggcgctgttaaatttcgttcaaattgatcagctgcgaata
tattttgatgcatcctcaaaaaagttccttatggcttcagaacctcctcctcctgcttct
tctgttcctcttgttgtatcttccaatgcgcagacaacaaatcacatacaacaggaacct
gaagtctccagtaaaattggttctgtcgcagaagatctaggtgtgcttcagtcaaaggca
caactctttcttgatggagatgatgatgaagaaatagttttcaagcctccagtttctgaa
aagcttccgagagttacttcagaacagactagtaatgagttattacagccagtggtggtg
tctgatgtcaattggtcaaatgatggtgcaccaccaccaatgacatttcagagcaatgga
ccggttctgactcccaatgtttatgttcaatctctcccaatctcttctcttggttgggca
gccaatgctgggcaacatgtgattcttgatgttggtgcaaggtcaacatctgatattttt
gagtctctgaaagcacctgatcataactgggtaagcactggtgcaccacttgttggctca
ctggatacagtccctatggcgagcttttccaatataatttcggatcagcgtacacctcca
tcgtcactcggttgtttcagtaacccagataatacagccatactccctgggcaagattca
ttcttattgagtgcattaaacaatgttaacataggtgcaagtggatttctggatcaaaga
gtgaatggtggactcagtggattacagtctgtgggaaatgtgcctcaggtatctgctcaa
gctactatgaatagtacaaatccaatgattggtcagtataaacatactgaagttaccatc
ccttctgccttctattcagttctgccgtcagtagtatcttctgatggtgtatcaaagaaa
aatcctgtcagccgtcctggaagacatgttggccctcctccaggatttaacaatgcccct
ccaaagcgacaggatgattccattttagctggcaatggccagcatgttcagaccaatgac
ggcatctggttggatggctacaggtcatcactggattatgtcaataatcagcgttttgca
cattcaaatgttaccactgccagcagtactttcaccactccctttccttttcctggaaaa
caagctttcagcatgcatcctagaggtagcgatgaaaaacagtggcaggatttccacctt
tttgggcccacaaagcaacttccagaacttaattttcagcaagggaaccagcaaaatggt
ccactggcggaacaattaccagcacaatctgcatggtctggcaattaccttgtgtga
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integrated database retrieval system
