KEGG   Oryza sativa japonica (Japanese rice): 4345254
Entry
4345254           CDS       T01015                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4345254
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4345254
   03041 Spliceosome [BR:osa03041]
    4345254
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     4345254
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     4345254
Spliceosome [BR:osa03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    4345254
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 BRAP2 HSP90
Other DBs
NCBI-GeneID: 4345254
NCBI-ProteinID: XP_015651001
UniProt: Q6Z0P6 Q6ZCL1
LinkDB
Position
8:join(13998017..13998060,13998198..13998238,14000095..14000258,14000456..14000555,14000649..14000821,14001063..14001593)
AA seq 350 aa
MAGGKMKEHDGASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGF
ITFADPAVVDRVIEDNHVINGKEVEIKRTIPKGAAPLKDFKTKKIFVGGLPSALKEDEFK
EFFSKFGKVVEHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKA
EPKKPSNPPHRSFDSEPRGRPHADGYDGLGNSYNYGGSFGPYRSPGSFGTRPGGYSSSYG
PGDYGSGYGAYGGALGGYRGESSLYSSRFGSTYGGSFGGGYAGGSYAGGLGGAYGRDAGG
FGGSSYGPSYDSSSGPGAGVGFGTGGLYGARGGYGSSGAGASGRYHPYAR
NT seq 1053 nt   +upstreamnt  +downstreamnt
atggccggcggcaagatgaaggagcacgacggcgccagcccagccaaaatcttcatcggc
gggctgcctaaggacaccaccatgggtactttcaaagaatactttgggaagtatggggag
atagttgatgccgtcataatgaaggaccgctttacccagaaacccagaggatttggattt
attacctttgcagatcctgctgttgttgacagagtgattgaggacaaccatgttattaat
ggaaaggaggttgaaattaagagaactattccaaagggtgctgcccccctaaaagatttc
aagacgaagaaaatatttgttggtggattaccatctgctttgaaagaagatgaattcaag
gagttcttttcgaaatttggaaaggtggtggaacatgaaatcattcgtgaccattcaact
aaccggtcacgaggatttggatttgtagtctttgatgcagaaaaaactgtagatgaatta
ttagctaagaaaggcaatatgattgatctaaatggttctcaggtggagatcaagaaggcc
gaaccaaagaaaccctctaacccacctcatcgttcatttgatagtgaacctaggggccgt
ccacatgcggatggttatgatggattgggcaactcttataattatggtggtagctttggc
ccctatagatcacctggaagttttggcactaggcctggtggttacagtagttcttatggc
cctggtgactatggtagtggctatggtgcttatggtggagcattaggaggatatcgtgga
gaatcatctctctattctagtcgctttggtagcacttatggaggaagctttggtggtggt
tatgctggtggcagttatgctggtggtttaggtggtgcatatgggcgtgatgctgggggt
tttggtggttctagctatggccctagttatgactcttcttcaggtcctggtgctggtgtt
ggctttggcacgggtggactctatggtgctagaggaggctatggtagcagtggtgctggt
gcttctggtcgttatcatccatatgcaaggtag

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