Oryza sativa japonica (Japanese rice) (RefSeq): 4345313
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Entry
4345313 CDS
T01015
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022
Basal transcription factors
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4345313
09124 Replication and repair
03420 Nucleotide excision repair
4345313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4345313
03400 DNA repair and recombination proteins [BR:
osa03400
]
4345313
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
4345313
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
4345313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Snapin_Pallidin
Motif
Other DBs
NCBI-GeneID:
4345313
NCBI-ProteinID:
XP_015650974
LinkDB
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Position
8:complement(15203196..15211975)
Genome browser
AA seq
606 aa
AA seq
DB search
MGSMTIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPRSAMKLNVDFRSIKGHKFNKVDG
SKPAPPLLNLSKDSDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVPPENSV
TSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDEANKGS
KQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKKMSEKD
FWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTLDMEAD
AGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTV
AEAIARSKKAAEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFD
SQQANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVALKVLN
ELNEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDHWAAIQELLQHFWSSYPITTSVLYN
KVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKSSKSG
NKPNGF
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggggtccatgacgatcggcgccaagtacaagaccacgctcaaggaccccggcaccacc
ggcgtcctgcgcatgaacgaggataagttcaccttcactccccatgatccacggtcagcg
atgaagctcaatgttgatttccggagcatcaaaggccacaagttcaacaaagtagatggt
agcaaaccagctccaccattactgaatctttcaaaagactctgacaagggtggaggctac
atgtttgagtttgacaatgttactaaccgcgacctatctcgtgactttgtagctaaagtt
ttaggtaagcaacaaggtacgataccgcctaaaccaaatgtgccccctgaaaattcagtt
acttcaactggtgaagaacagcttagtgctgcagaaatgcaacgtcggatgaaattgctg
caagaagatagtgaattgcagaagttacatatgaagtttgttcttggcaatattctgcaa
gaatctgaattttgggcaacaagaaagaatttacttgaggacgaagcaaataaaggatca
aaacaaaggccaggtttcaaaagtgccatgctagctgatgttaggccatcggctgatggt
cggacaaataaggttacttttagtctcactaccgagataattcatcagatatttgcagaa
aagccagctgtgcatcgagcgtttttagattttgttccaaaaaagatgtcagaaaaagat
ttttggacaaaatattttagagctgagtatcttcttaggacaaaaaatactgtggcagca
actgctgaggctgctgaagatgaagagttagccatttttctgaagaatgacgatatacta
gcaaaggaggcaaggttgaagataaaacgagtcgatccaacattagatatggaggcagat
gctggagatgactacatccatcttccggaccatggcattattcgtgatggcagtaaagag
acgattgataatgatggtgaattggccaggagaacactttcgcaggatctgaatcgccat
gctgctgttgtgcttgaaggaagatcttcagacgtggaattaactgatacgaagactgtt
gctgaagcaattgcaaggtccaagaaagctgcagaaccaccttcaagttctatttctgat
gataccaatcatgagaggttggtaaaagtggcccgcatgactgagatagaggatctacaa
gctccacggagcctcccatacgcaccactttgtataaaggatcctcgagaatattttgat
tcccaacaagcaaatgctctgagatctttaggtggcaacaatgatggaagacatgctcgt
aattgcaggctgagtacagatgatgcatttgatcatttgttgggccaaatatcttctata
aaagttaatgggttgaactatccggttattcagtctgatgtggctcttaaggttctgaat
gaattgaatgaaggaatttcacgttcaagaagacttaatcttaagaatcctcaagatagt
ctgcttggtcaaatccctcgacgcacacgagatgaacttatggatcactgggcagctatc
caggaattattgcagcatttttggtcatcatatccaataacaacttcagttctttataat
aaggttcaaagaattaaggatgcaatgacccagatatatcaaaagttgcaggatataaag
gaatcagcacaacctgatgtgagacacgaaatatctcaactagtaaagcccatgacccag
gctttggatgctgccttcaaccatgacttggagcagcagcaaaaatcatcgaaatccggg
aataagcccaatgggttttaa
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