KEGG   Oryza sativa japonica (Japanese rice): 4345313
Entry
4345313           CDS       T01015                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03022  Basal transcription factors
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    4345313
  09124 Replication and repair
   03420 Nucleotide excision repair
    4345313
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4345313
   03400 DNA repair and recombination proteins [BR:osa03400]
    4345313
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     4345313
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     4345313
SSDB
Motif
Pfam: BSD PH_TFIIH MRP Snapin_Pallidin
Other DBs
NCBI-GeneID: 4345313
NCBI-ProteinID: XP_015650975
UniProt: Q6ZC85 Q0J6B8
LinkDB
Position
8:complement(join(15279899..15279979,15280324..15280392,15280662..15280709,15281539..15281616,15281725..15281838,15282871..15283062,15283154..15283278,15283358..15283414,15283844..15283967,15284113..15284178,15284291..15284446,15284615..15284671,15285298..15285342,15285476..15285571,15285667..15285742,15286513..15286651,15286918..15286981,15287089..15287162,15287480..15287558,15288108..15288182))
AA seq 604 aa
MGSMTIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPRSAMKLNVDFRSIKGHKFNKVDG
SKPAPPLLNLSKDSDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVPPENSV
TSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDEANKGS
KQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKKMSEKD
FWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTLDMEAD
AGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTV
AEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQ
QANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVALKVLNEL
NEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDHWAAIQELLQHFWSSYPITTSVLYNKV
QRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKSSKSGNK
PNGF
NT seq 1815 nt   +upstreamnt  +downstreamnt
atggggtccatgacgatcggcgccaagtacaagaccacgctcaaggaccccggcaccacc
ggcgtcctgcgcatgaacgaggataagttcaccttcactccccatgatccacggtcagcg
atgaagctcaatgttgatttccggagcatcaaaggccacaagttcaacaaagtagatggt
agcaaaccagctccaccattactgaatctttcaaaagactctgacaagggtggaggctac
atgtttgagtttgacaatgttactaaccgcgacctatctcgtgactttgtagctaaagtt
ttaggtaagcaacaaggtacgataccgcctaaaccaaatgtgccccctgaaaattcagtt
acttcaactggtgaagaacagcttagtgctgcagaaatgcaacgtcggatgaaattgctg
caagaagatagtgaattgcagaagttacatatgaagtttgttcttggcaatattctgcaa
gaatctgaattttgggcaacaagaaagaatttacttgaggacgaagcaaataaaggatca
aaacaaaggccaggtttcaaaagtgccatgctagctgatgttaggccatcggctgatggt
cggacaaataaggttacttttagtctcactaccgagataattcatcagatatttgcagaa
aagccagctgtgcatcgagcgtttttagattttgttccaaaaaagatgtcagaaaaagat
ttttggacaaaatattttagagctgagtatcttcttaggacaaaaaatactgtggcagca
actgctgaggctgctgaagatgaagagttagccatttttctgaagaatgacgatatacta
gcaaaggaggcaaggttgaagataaaacgagtcgatccaacattagatatggaggcagat
gctggagatgactacatccatcttccggaccatggcattattcgtgatggcagtaaagag
acgattgataatgatggtgaattggccaggagaacactttcgcaggatctgaatcgccat
gctgctgttgtgcttgaaggaagatcttcagacgtggaattaactgatacgaagactgtt
gctgaagcaattgcaaggtccaagaaagaaccaccttcaagttctatttctgatgatacc
aatcatgagaggttggtaaaagtggcccgcatgactgagatagaggatctacaagctcca
cggagcctcccatacgcaccactttgtataaaggatcctcgagaatattttgattcccaa
caagcaaatgctctgagatctttaggtggcaacaatgatggaagacatgctcgtaattgc
aggctgagtacagatgatgcatttgatcatttgttgggccaaatatcttctataaaagtt
aatgggttgaactatccggttattcagtctgatgtggctcttaaggttctgaatgaattg
aatgaaggaatttcacgttcaagaagacttaatcttaagaatcctcaagatagtctgctt
ggtcaaatccctcgacgcacacgagatgaacttatggatcactgggcagctatccaggaa
ttattgcagcatttttggtcatcatatccaataacaacttcagttctttataataaggtt
caaagaattaaggatgcaatgacccagatatatcaaaagttgcaggatataaaggaatca
gcacaacctgatgtgagacacgaaatatctcaactagtaaagcccatgacccaggctttg
gatgctgccttcaaccatgacttggagcagcagcaaaaatcatcgaaatccgggaataag
cccaatgggttttaa

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