Oryza sativa japonica (Japanese rice): 4345502
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Entry
4345502 CDS
T01015
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4345502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4345502
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
4345502
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
4345502
NCBI-ProteinID:
NP_001409492
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All DBs
Position
8:complement(join(19167960..19168031,19168121..19168231,19168343..19168429,19168530..19168621,19168832..19168971,19169065..19169243))
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AA seq
226 aa
AA seq
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MGLEIMTDEAAAAPSPAAAAARVEIYPLCRYYFGARDVAAGGAGAGLETAADRALRLKAN
FAAHGLRTSVHGVLLVELFDHPHVLLLQVRNSSFLLPGGRLRPGEQDVQGLKRKLSTKLS
VAGHQDDEDGDGDDEWQIGECIGMWWRSEFDAAPFPYLLPNARAPKECIKLFLIKLPVSR
QFVVPRNMKLLAVPLSQIHDNAQVYGSIIAGIPNLLSKFSMNIISD
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggggctggagatcatgacggacgaggctgctgctgcgccttcgcccgctgcggcggcg
gcgcgtgtcgagatttacccgctctgccgctactacttcggcgccagggatgttgccgct
ggtggcgcgggtgcggggttggagaccgccgccgaccgcgccctccgcctcaaggccaac
ttcgcggcgcacgggctccggaccagcgtccatggcgtcctgctggttgagctctttgat
catccgcacgtgctgctcctgcaagtcaggaactcctccttcctcctccccggtggccgc
ttgagaccaggggaacaagatgtccaagggctcaagcgcaaactttcaaccaagttatcg
gtagctggacatcaggatgacgaagacggcgacggggacgacgaatggcagattggagag
tgcattgggatgtggtggagatctgagtttgatgctgctccatttccatatctacttcca
aatgcccgtgcaccaaaggaatgcataaaactgttcttgattaaactgccggtgtctcgc
caatttgtcgtgccaaggaacatgaagctgctagctgtgcctctatcccagattcatgac
aatgctcaggtatatggctcaatcatagctggaattccaaacttgttatcgaagttctcc
atgaacatcatcagtgactga
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