Oryza sativa japonica (Japanese rice) (RefSeq): 4345619
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Entry
4345619 CDS
T01015
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
4345619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
4345619
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
4345619
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rad4
BHD_3
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
4345619
NCBI-ProteinID:
XP_015649899
UniProt:
Q0J5K8
Q7EY71
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Position
8:20559021..20566218
Genome browser
AA seq
880 aa
AA seq
DB search
MRTRSQRDGHHAAAAAETPPSGASGGSGGDVARGGGTPRRRRRASPAAEKGKSPAKVEME
SALEDKSKNVKVHAEGYDDAGMTRFGRDGSEKNSLEEEDPDAADMDWEEGIVFAAEHDEC
YSHELGETVTVEFTDLPSSTEKKTARRLTAEEKELAELVHRVHLLCLLARGRVIDKACND
PLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIAQSDDKGSFKSNLAFA
LQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSNQDEPRLCTKALP
SSSFVAGHNEYNNLSPVLSQNNTEGSINTTPKQVKVQGCRKSLSKKLSKCKANQRDSSAS
LSKDSSSSSQYPSTSSNAEVPRRKGDLEFELQLEMALLASAAKSQDNKLATQLNQSTDSL
LSSTPPLKKLRKSEEASSNSSVVWSRNRAPLFWAEVFCGGEASSGRWVHVDVANDIIDGE
QKVEAASAVCRKPLRYVVAFAGNGAKDVTRRYCLQWHRIVQGRVNPEWWKSVLAPLERLE
LAATNNTEEMELQTRALTEPLPTNQQAYKDHHLYALEKWLHKNQVLHPKGPVLGFCKGNP
VYPRSCVQTLQSRHGWLREGLQVRENELPAKVVTRPKRTFNSQSIQSNSNSNEDGLKPTM
ELYGKWQLEPLQLPHAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLPRIFQVAKRLGIDF
APAMVGFDYRNTRCLPVFDGIVVCSEFKNTILEAYAEQEERRQAEERKQEEAQALIRWYQ
LLCSVVTTQRLKDSYKAPSSEHGPEGPSQDVSQQKGTRKSRSSETKTRSSRLQADRPFDS
PFPVHDHEHEYPEEDQSFDEETFVRTKRCPCGFSIQVEEL
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgcggaccaggagccagcgcgacggccaccacgccgccgccgctgccgaaaccccgcct
tccggggcaagcggaggatcaggaggggacgttgcgaggggcggtggcacgcctcgccgt
cgccggagggcttcgccggccgcggagaaagggaagtcgcccgccaaggtggaaatggaa
tcggcattggaggataaaagtaaaaacgttaaggtccatgcagagggttatgacgatgcc
gggatgacgaggttcggtagggatggctctgaaaagaacagtttggaggaagaagatcca
gatgcagctgatatggactgggaagaagggattgttttcgcggcggaacacgatgagtgt
tattcccatgagcttggagagacagtcaccgttgagttcactgatctaccctcttccact
gaaaagaagactgctcggaggcttactgctgaagaaaaggagttggctgaactcgtgcac
agggtccatttgctttgcctactagcaaggggtagggtaattgacaaggcttgcaatgat
cctctgattcaggcttcaattctctctgttttaccacaacatgtactacggaattctgta
gacactccaattctgaaagctaatgaactgcgtagtcttgtgagctggttccacaacact
ttcagtgtaattgcacaatccgacgacaaggggtcttttaaatcaaatttggcatttgct
cttcaaagttatgtaggcactgctgaagaggtttgtgcactttcagtggcattgtttagg
gctctcaacttaacagctaggtttgttgcgaatctggatgttgctggtctcaagcctgac
actaaatcaatggggacatcaaatcaggatgaacctaggctttgtacaaaggcgctgcca
tctagttcttttgttgcaggccataatgagtataataacctttcacctgtcctgtcacaa
aacaatactgaaggtagcatcaatacaactccaaaacaagtcaaagttcaaggctgcagg
aaaagtttgtctaaaaaattgtcgaagtgcaaggcaaatcagagagatagctctgcatca
ctatcaaaagatagctcatccagcagccaatatccttccacctccagtaatgctgaagta
ccaagacgaaaaggggatttggaatttgagttgcagctggaaatggctcttttagcatct
gcagctaaaagtcaagacaacaagctagcaactcaattaaatcagtcaactgatagctta
ctaagttcaactccaccattgaagaagttacgaaaaagtgaagaagcctcaagcaactcg
agcgtggtttggtcgaggaatagagcaccgttattttgggctgaggtattttgtggtggc
gaggcatcgtctggaagatgggtccatgttgatgttgcaaatgatattattgatggtgaa
caaaaagtagaagctgcttccgctgtttgcaggaagcctttgagatatgttgttgccttt
gctggaaatggtgctaaagatgtgaccagaaggtattgcctgcaatggcacagaattgtt
caggggagagtgaatcctgagtggtggaaaagtgttttggcacccctagagcgtcttgaa
ttggcagcaacgaacaacactgaagaaatggaacttcagaccagggccttaacagagcct
cttcctaccaatcaacaggcctacaaagaccatcatctatatgcccttgagaagtggctt
cacaagaaccaagttcttcaccccaaaggcccagtgcttggcttctgtaaagggaatcct
gtttatcctagatcttgtgttcagacactgcaatcaagacatggatggttgcgggagggt
ctgcaagtcagagaaaatgagttgcctgcaaaggtcgtgacgcggccaaagaggactttc
aattctcagtcaattcaatctaatagtaatagtaatgaagatgggcttaagccaaccatg
gaactatatggtaaatggcagctggaaccgctgcaacttccccatgcagtaaatggtatt
gtaccaaagaatgagcgtggtcaagtcgatgtgtggtcagagaaatgtcttccgcctggt
actgtacacctgaggttaccaagaatattccaggtcgcaaagagacttggaattgatttt
gccccagccatggttggatttgattatcgaaacacccggtgccttccagtttttgatgga
attgttgtctgttccgaattcaaaaatactatcttagaggcatatgcagaacaagaggaa
cggagacaagccgaggagaggaagcaggaggaagctcaggctcttattaggtggtatcag
ctgctgtgttccgtcgtaaccacacagcggttgaaggactcttacaaagcaccctcatca
gagcacggaccagaaggaccatcccaagatgttagtcagcagaagggcacacgcaaaagt
cgaagctcggaaacgaagactcgctcaagcagactacaggcggaccgaccatttgattct
ccttttcctgtccatgaccatgagcatgagtatccagaggaagatcagagcttcgacgaa
gagacgtttgtgaggacgaaacgctgtccatgtggtttttcaatccaagttgaggaattg
tag
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