Oryza sativa japonica (Japanese rice): 4345621
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Entry
4345621 CDS
T01015
Name
(RefSeq) THO complex subunit 4D isoform X1
KO
K12881
THO complex subunit 4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4345621
09122 Translation
03013 Nucleocytoplasmic transport
4345621
03015 mRNA surveillance pathway
4345621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4345621
03041 Spliceosome [BR:
osa03041
]
4345621
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
4345621
TREX complex
4345621
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4345621
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
4345621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
4345621
NCBI-ProteinID:
XP_015649900
UniProt:
Q0J5K6
Q7EY69
LinkDB
All DBs
Position
8:complement(join(20716453..20716675,20717170..20717226,20717867..20718057,20718788..20718856,20718951..20719085,20720071..20720256))
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AA seq
286 aa
AA seq
DB search
MAYYARRGGDRVSGGGRVQGGGGGGGGGGRGGYVLRGRSGMPPRGPLGLGVNSRPSARTI
AKSFSRTKDMTWRPDLFSDSMAASGIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFA
VHFDGYGRPNGTAEVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLGLPMTPRINVV
GASNGRPTRTVVMTPEIGQRGSGSSSRPTGPTVNRYNRGAFQAGRGRGRGRGRAPFQSQF
QGRGTGSVRGRGQFQGRGRGRRQAGKTADELDKDLETYHAEAMKTD
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggcgtattacgccaggaggggtggggatagggttagtggtggtggccgtgttcaaggt
ggtggaggtggtggaggtggtggtgggagaggtggatatgtgctgcgtggaagatcaggg
atgcctcctcgagggccccttggcctcggggttaactcgcggccatcagcgcgcactatt
gctaagtcttttagcagaaccaaagacatgacctggagacctgatctgtttagtgatagt
atggcagctagtggaattgaaactggtacaaaattgtacatttcaaacttggactatggg
gtttccaatgaggatataaaggagctgttttcagaagttggtcacttgaagcgctttgct
gttcactttgatggttatgggcgcccaaatggcacagcagaagtggtgtttactaggaga
agtgatgcaattgctgcattgaaacgttacaataatgttctgcttgatggtaaagctatg
aagatagaagttattggaagtgacttaggtttgcctatgacacctcgcataaatgtggtt
ggggcttctaatggcagacctacaagaacagttgttatgacgcctgaaattggccagcgt
ggcagtggttccagcagtagaccaacaggtcctacagttaatagatataaccgtggtgcc
ttccaagctggccggggccgaggccgtggcaggggtcgtgccccattccagtcccagttc
cagggccgtggcactggcagtgtcaggggccgtggtcaattccagggccgtggtcgcgga
aggaggcaagctgggaagactgcagatgagctggacaaagacctggaaacttatcatgct
gaggcaatgaagaccgactga
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integrated database retrieval system
