KEGG   Oryza sativa japonica (Japanese rice): 4345632
Entry
4345632           CDS       T01015                                 
Name
(RefSeq) probable ubiquitin receptor RAD23 isoform X1
  KO
K10839  UV excision repair protein RAD23
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03420  Nucleotide excision repair
osa04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    4345632
  09124 Replication and repair
   03420 Nucleotide excision repair
    4345632
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:osa03051]
    4345632
   03400 DNA repair and recombination proteins [BR:osa03400]
    4345632
Proteasome [BR:osa03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    4345632
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      4345632
SSDB
Motif
Pfam: XPC-binding UBA ubiquitin UBA_7 Rad60-SLD UBA_RAD5A BAT2_N CUE Ubiquitin_4 Crinkler UBA_3
Other DBs
NCBI-GeneID: 4345632
NCBI-ProteinID: XP_015650876
UniProt: Q6ZKC1 A3BTC8
LinkDB
Position
8:join(20934301..20934366,20935610..20935771,20935974..20936024,20936554..20936618,20936843..20936917,20937061..20937238,20937629..20937811,20937894..20938007,20938085..20938194,20938284..20938362,20938493..20938630)
AA seq 406 aa
MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE
ENKVVENNFIVIMLSKKGSSSAASSTAKEPTKQPSVDRAIPTAPATQPPAPPAPVSEPVT
APVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVM
RALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPAAVQPVDPSQAPQS
AQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLLSLVQANPQILQPL
LQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMPQTVAVTPEENEAIQ
RLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDDDAPEPPQ
NT seq 1221 nt   +upstreamnt  +downstreamnt
atgaaggtctccatcaaaacgctcaagggctccagcttcgagatcgacgtcgagcccacc
agcaaggtcagtgatgttaaaaagctcatcgaggttacgcaaggagataatgtctacccc
gctgatcagcaaatgctgatccatcaagggaatgtccttaaaaacgacacaacacttgaa
gagaacaaagttgttgagaacaacttcattgtgataatgttatctaagaagggatcatca
agtgctgcttcaagtacagctaaggagcccacaaaacagccctcagttgaccgggcgata
cccactgcgcctgcaacccaaccacctgctccaccagcacctgttagcgagcctgtgact
gcaccagttccaactgcaacaactgcttcagctccagcagctgctgtcaccgctgcatcc
accgaagcagataattatggtcaagctgcgtcgaaccttgttgctggaagcaatttagaa
gggactgttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatg
cgtgctctgcgagctgcatacaacaatccagaacgggctgtggagtatttgtacaccggg
gttcctgagcaagctgaggcccctgctgcagttcaagcacttcctgtccctgctgcagtt
caagcacttcctgtccctgctgcagttcaaccagttgacccaagccaggctccccaatca
gctcaactttcaattccatcatctggacccaatgccaatccattggacctgtttcctcag
gtccttccaaatgcttctgcaaatgctggtggtggaaatcttgatgttctgcgaaacaat
tcacagttccgtggcttgctttctttggtgcaggctaaccctcaaattctgcagcctttg
cttcaagagttggggaaacaaaatccacagattttgcaactgattcaggaaaaccaggct
gagttcctgcgcttaatcaacgaacctgcagagggagctgaagggaacttgctagaccag
tttgctgcgggaatgcctcaaacagtggctgtcacacctgaggagaacgaagccatacaa
cgtctggaacaaatggggtttgatcgcgatctggtcctggaggtattcttcgcgtgcaac
aaggatgagctgttggccgcaaactatctcttggaccacatgaacgagttcgacgacgac
gcccctgaaccaccgcaataa

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