Oryza sativa japonica (Japanese rice): 4345683
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Entry
4345683 CDS
T01015
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4345683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4345683
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4345683
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4345683
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
4345683
NCBI-ProteinID:
XP_015651075
UniProt:
A3BTI8
Q6Z9G7
LinkDB
All DBs
Position
8:21557424..21558290
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AA seq
288 aa
AA seq
DB search
MAAAAAACVESPDEGVEIREVWAGNLEAEIAAIRDEVDRYPYVAMDTEFPGIVCRPVGNF
RTTDEFNYANLEANVNMLKLIQLGLTLSDEGGDLPRRGTGGRRCIWQFNFRGFDPRTDPS
NADSIQMLRTCGIDFDRFAAEGADPIRFAELLMSSGVVLNADVQWITFHSGYDFGYLLRL
LTGRNLPDNMPAFFDLIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAG
SDSLLTLGCYNKIKEVYFKGSTEKHAGVLYGLVIEDGVNRPPPTQPNE
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgccgcagcctgcgtagagagccccgacgagggcgtggagatccgggag
gtatgggcggggaacctggaggcggagatcgcggcgatccgcgacgaggtcgaccggtac
ccgtacgtcgccatggacacggagttcccgggcatcgtgtgccgccccgtcggcaacttc
cgcaccaccgacgagttcaactacgccaacctcgaggccaacgtcaacatgctcaagctc
atccagctcggcctcaccctctccgacgagggcggcgacctcccgcggcgggggacgggg
ggcaggcgctgcatctggcagttcaacttccgcgggttcgacccccggaccgacccgtcc
aacgccgactccatccagatgctccgcacctgcggcatcgacttcgatcggttcgccgct
gagggggccgacccgatccgcttcgccgagctgctcatgtcgtcgggcgtcgtgctcaac
gccgacgtgcagtggatcaccttccacagcgggtacgacttcggttacctgctcaggctg
ctcaccggccggaacctgccggacaacatgcccgccttctttgacctcatcagaatctac
ttcccggtgctctacgacatcaagcacctcatgaggttctgcagcaacctccacggcggc
ctgagcaggctcggtgagcttcttgatgtcaagcgtgtggggacctgccaccaggccggc
tctgactcgctgttgaccctcgggtgctacaacaagatcaaggaggtgtacttcaaagga
tcgaccgagaagcatgccggtgtgttgtatgggcttgttattgaggatggggtgaacaga
ccaccaccaactcagcccaatgaatga
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