Oryza sativa japonica (Japanese rice) (RefSeq): 4345901
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Entry
4345901 CDS
T01015
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03015
mRNA surveillance pathway
osa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4345901
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
4345901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4345901
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
4345901
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
4345901
NCBI-ProteinID:
XP_015651098
UniProt:
Q0J4U0
Q6ZBP8
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Position
8:complement(24238206..24242121)
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AA seq
603 aa
AA seq
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MEPDGDAAFHRNEAISAVQDVDQYYGDDDDFDDLYNDVNVGDGFLHNSSSSQPPPSQQLP
PPSLPPPLPQKQPPSQQLPPPPQQQQPPPQHSLPPPPPLPQAPPPQQQKVHIPGVAAPAP
NHPPSQPNLPPPAAPAPLPPQQHQIQQGGGDGFHRPGGNYGGGPIVVGNGGPAVVGGDGP
GGTTLFVGELHWWTTDADLEAELIKYGPVKEVRFFDEKASGKSKGYCQVDFYDPAVATAC
KEAMNGHLFNGRPCVVAFASPNSVRRMGEAQVKNQQSMSAQTSSMQPKGGRGGGGAGSPQ
VGGNYGGGRGGGPGGGAGGGGGNWGRGGGGMGRGPAGNMRNRMGGPAGGRGIMGNGGMVA
PPPPMLPPGGMMGQAFDPTGYGAMGRMGAGFGGFPGAPGAGPFPGLMQPFPPVVAPHVNP
AFFGRGGMGAGGVGMWPDPNMGGWGGEEQSSYGDDAASDQQYGEGGSHGKERAERPPDRE
WSGASERRREREKDIPPAQEWPDRKHRDERDMGRERDRDYDRERERDRDRERERDRDRER
DRERDRERERDRHRDDRDRYGDYHRHRDRDSERNEDWDRGRSSGVRSRSREVDHSKRRRM
TPE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggagcccgacggcgacgccgcgttccaccgtaacgaggccatctccgccgtccaggac
gtggaccagtactacggcgacgacgacgacttcgacgacctctacaacgacgtcaacgtc
ggcgacggcttcctccacaactcctcctcctcccagcccccgccttcccagcaactccct
ccgccgtcgctgccgccgccgctgccacagaagcagccaccgtcccagcagctccctccg
cctccccagcagcagcagccaccgccccagcactcgctgcccccgccgccgccgctcccg
caggcgccgcctccgcagcagcagaaggtgcacatccctggcgtggccgccccggctccg
aatcaccctccatctcagcccaatctcccgccgccggccgccccggcgccgctgccgcct
cagcaacaccagatccagcaaggcggtggcgacggattccaccgcccgggaggcaattat
ggcggtggtcccatcgtggtcgggaacggcgggccagctgttgttgggggtgatggtcct
ggcggcacgacgctgttcgtcggggagctccactggtggacgaccgacgccgatcttgag
gcggagctcatcaagtatgggccggtgaaggaagtgagattctttgatgagaaggcgagt
ggcaagtccaagggttactgccaggttgacttctatgatcctgctgttgccactgcctgc
aaggaggcaatgaacggccacctgttcaatggtcgtccgtgcgttgtggcctttgcctcg
ccgaattccgtccgtcgaatgggcgaggcgcaggttaagaaccagcaatccatgtctgca
cagacatcgtctatgcagcccaagggtgggagaggcggcggcggtgctggaagccctcag
gttggtggtaattatggtggtggccgcggaggtggacctggtggtggtgcaggcggaggt
ggcggaaattgggggagaggtggtggagggatggggagaggacctgctgggaatatgagg
aatcggatgggaggaccagcaggcggccgagggatcatgggaaatggtggaatggttgca
ccaccacctccaatgctgcctccaggcggaatgatggggcaggcttttgatcctactggt
tatggtgcaatgggaaggatgggtgctgggtttggtggattccctggtgcaccaggggca
gggccattccctgggttgatgcagccattcccacctgtggttgcaccacatgttaatcct
gctttctttggaaggggtgggatgggtgctggcggagttggtatgtggcctgaccccaac
atggggggatggggtggggaggaacaatcaagttatggggatgatgcagcgtctgatcag
cagtatggggaagggggaagccatggtaaggagagggccgagaggccacctgatagggag
tggtctggtgcatcggagaggaggcgggagagggagaaggatatacccccagcacaggag
tggccagataggaagcaccgggatgaacgagacatgggccgagagagagatcgtgactat
gacagagagagggagagagatcgtgatagggagagagaaagagaccgtgacagggagagg
gacagagagagggacagggaaagggagagggataggcacagggatgacagagaccgctat
ggcgattatcatcggcacagggaccgtgattcagagcgtaatgaagattgggacagagga
agatcatctggtgtgcgcagcaggtctagggaggttgatcattctaagcgtaggcggatg
acgcctgagtag
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