Oryza sativa japonica (Japanese rice): 4346059
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Entry
4346059 CDS
T01015
Name
(RefSeq) pumilio homolog 5
KO
K17943
pumilio RNA-binding family
Organism
osa
Oryza sativa japonica (Japanese rice)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PUF
PUF_NOP9
NTS_2
Motif
Other DBs
NCBI-GeneID:
4346059
NCBI-ProteinID:
XP_015650131
UniProt:
Q6YZW8
Q6ZBK3
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All DBs
Position
8:join(25984047..25984685,25986089..25987506,25987604..25987745,25987909..25988016,25988840..25989052,25989137..25989247,25989593..25989787,25990049..25990220,25990329..25990351)
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AA seq
1006 aa
AA seq
DB search
MATESAVRLIGGTGSGNWSKDFGAFDSSLGSLSGEGLGFVDNNSGVYGGWRESVPNRSGS
APPSMEGSLAALGHMIGQQSGNLEATLGGKLGNVADSSKSEEQLRADPAYCDYYGSKVNL
NPRLPPPLMSRESRRFMNRVGKVKEWRVVSQDDSNKGSLFIPRSTLSTHREEPEDDRSPR
LDSSSAEDAQGSGKSGSNFDSHYTCMNLGDFASESFQQKAASLYDSSTHPSNSNTGDGIS
DHSDINSSTNFSIDAVKTSGLNSWTPVPVTNTVRSTHSNSISSTSVPSSSSPDNNPSMQT
SQQEKPSIDIKHGNDVPGSGSILTELDTVNSNMKNLRISLDSHDTIHVKQQWPDNVLQQF
GPSPLVQGDPIQMIPQGTHLPHVPFVENLSHTQLKLPTGDMQQFLPPPGMTTPFYAPNSF
GSPYYQNLHPASVLPTPFGTAGYALSGSALPPVMTSYAPQVSVATPVDSPITPSFSGRPS
GFPSPGNLSAGAEFVQPYKMYGQQLGVTMQPSVPDPNFFQFFQHPSLLSYAGINQYNTMG
PRVSVVGNPADSFDPQKVLSQPAYPSDQRLQLPRTGIYNSPAARRGGAAPNYQGMTPYVG
APMTYPTSPVFQGQTFTGVFSPGRRNDSVRFQTPSRNMTAYSGVQGQREREKFDDPKACS
FLEELKSNRARRVELSDIAGHIVEYSADQHGSRFIQQKLENCTAEEKASVFSEVLPHASS
LMTDVFGNYVIQKFFEHGTPEQRRDLATKLVGHVLPLSLQMYGCRVIQKALEVMELDQKI
ELVRELDGNIMRCVRDQNGNHVIQKCIECVPTEHIGFVVSAFRGQVASLSMHPYGCRVIQ
RVLEHCGGDSQGQCIIDEILESACVLAQDQYGNYVTQHVLERGRGHERTQIISKLAGQVV
TMSQNKFASNVIEKCFQHGDMTERDLLIREIVKQTEGNDNLLAMMKDQYANYVVQKILET
CNEQQRELLLSRVKGHLQALRKYTYGKHIVSRVEQLCGEGDTESDS
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggctacagagagcgctgtccggttaattggaggaacggggtctggtaactggagcaag
gacttcggtgcatttgactcatcactgggtagtctttcaggagaaggtctggggtttgtg
gacaataacagtggcgtttatgggggctggagggagtctgtcccaaatcgcagtggaagt
gcgccgcctagcatggaagggtctcttgctgctcttggtcatatgataggtcagcagagt
gggaacttggaagccactttaggggggaagctgggaaacgtagcggacagttccaaatct
gaggagcagctacgtgctgatccggcatactgtgactattatggctccaaggtcaatttg
aacccaaggcttccgccaccacttatgtctagggagagcagacgcttcatgaaccgggtt
ggcaaagttaaagaatggagagtggtttctcaagatgacagcaacaaaggttccttgttt
attcctcgatctactctgtcaacacacagagaagagcctgaggacgataggtcaccaagg
ttggattcaagttcagcagaggatgcccaaggttctggtaaaagtggatccaactttgat
agccattatacttgtatgaatcttggagattttgcatcggagagttttcagcagaaagcc
gcttctttgtatgacagttctactcatccatcaaatagcaatactggtgatggtatatct
gaccattctgacattaactcatcaacgaatttttcaattgatgctgtcaagacatctggg
ttgaattcatggacacctgttcctgtgactaacacagtgagaagtacacatagcaacagt
atttcatctacatctgttcccagttcatcaagtcctgataacaaccccagtatgcaaact
tctcagcaagagaagcctagcatagacatcaagcatgggaatgatgtgcctggcagcggt
tctattctgactgaactagatactgtgaactccaatatgaagaatctgaggataagtttg
gatagccatgataccatacatgttaagcagcagtggccggacaatgtcttgcagcagttt
ggcccctcacctttagtccagggtgatcctattcaaatgattcctcaaggaacacatctt
ccccatgttccttttgttgagaacttgtcgcatactcaattaaaattaccaactggtgac
atgcagcaatttttaccaccgcctggtatgacaacacctttttatgcaccaaattctttt
ggaagcccttactatcaaaatttgcatccggctagtgtattgccaacaccatttggaact
gctggatatgctttgagtggttcagctttaccacctgttatgactagctatgctccccag
gtttctgttgctacacctgttgacagccctattactccaagctttagtggtagaccatct
ggttttccttcaccagggaatcttagtgcaggagcagaatttgttcagccatataaaatg
tatggacaacaacttggggttaccatgcagccatccgttcctgacccaaacttctttcag
ttctttcagcatccttctttactttcatatgctggtataaatcaatacaatacaatggga
ccaagggttagtgttgttgggaatcctgctgatagttttgatccccaaaaggtattatcc
cagcctgcgtatccatctgatcagaggcttcaacttccaagaactggaatttataactct
cctgcagccagaagaggaggggccgctccaaattatcaaggcatgacaccatatgttgga
gcaccaatgacttacccaacaagcccagtgtttcagggacagactttcactggagtattt
tctcctggtaggagaaatgattctgtgagattccaaactccctcaagaaatatgaccgct
tattctggtgttcaagggcagcgagaaagggagaaattcgatgacccaaaggcatgttcc
ttcctggaagaactcaagtctaacagggctcgcagggttgaactatctgatattgcaggc
catatagtagaatacagcgctgaccaacatggcagccgattcatccaacagaagttagag
aactgcactgctgaagagaaggcatctgtgttttcagaagttctccctcatgcttcatca
ttaatgactgatgtgtttgggaattatgtgatccaaaagttcttcgaacatggaactcct
gaacaaaggagggatcttgccactaagcttgttggtcatgttttacctttgagccttcaa
atgtatggatgccgagtaattcaaaaggctcttgaagttatggaacttgaccaaaaaata
gaactagttcgtgagcttgatggaaacattatgcgatgtgtccgtgatcaaaatgggaac
catgttatacagaagtgcattgaatgtgttcctacagaacatattggctttgtagtatct
gcttttcgggggcaggtggccagcctttcaatgcacccatatggttgccgtgttattcag
agagttttggagcactgcggtggtgattcacaaggccagtgcataatagatgagatactg
gagtcggcttgcgtcctcgcacaagatcagtatggcaactatgttacacagcatgttttg
gaaagaggaaggggacatgaaaggacccaaattatcagtaaattggctgggcaggttgtt
accatgagtcaaaacaaattcgcatcaaatgtgatagagaagtgctttcaacatggggat
atgacagagcgagatcttctgatccgggagattgtgaagcagactgagggcaatgataac
ttgctggcgatgatgaaggaccagtatgcaaactatgtagttcagaagatacttgaaaca
tgcaacgagcaacagagagagctcctgctcagccgtgtgaagggccatctgcaagcatta
aggaagtacacctatggcaagcatattgtgagccgagttgagcaactttgtggtgaagga
gacaccgagtcagattcttga
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