Oryza sativa japonica (Japanese rice): 4346392
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Entry
4346392 CDS
T01015
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03020
RNA polymerase
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4346392
09124 Replication and repair
03420 Nucleotide excision repair
4346392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4346392
03400 DNA repair and recombination proteins [BR:
osa03400
]
4346392
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
4346392
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
4346392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
4346392
NCBI-ProteinID:
XP_015612385
UniProt:
Q6YX88
B9G242
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All DBs
Position
9:join(4946901..4947394,4948238..4948475,4952908..4953168)
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AA seq
330 aa
AA seq
DB search
MERAAGGVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIE
VNSSVLNDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSD
QTLEVTSNDLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRL
RAIARKGIGKDHAKWSPAATVTFMYEPEIRINEELMETLTLEEKRNLVESSPTKVFNIDP
NTQQVVVEDAEAYTYDDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNA
ITVLRQKLDAVRLQDDDADLGELGAHLVGG
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggcggcaggcggcgtgtcgtaccagcggttcccgcgggtgcggatccgcgag
ctgaaggacgactacgccaagttcgagctccgcgacaccgacgccagcatggccaacgcc
ctccgccgcgtcatgatcgccgaggtccccaccgtcgccatcgacctcgtcgagatcgag
gtcaactcctccgtcctcaacgacgagttcatcgcccaccgcctcggcctcatccccctc
acctccgccgccgccatggccatgcgcttctcccgcgactgcgacgcctgcgacggcgac
ggctcctgcgagtactgctccgtcgagttccacctcgccgcccgcgccaccgactccgac
cagaccctcgaggtcacctccaacgacctccgctccaccgaccccaaggtctgccccgtc
gaccaggctagggcctaccagcacgccctcggcggaactgaacccttcgacaccgccgct
gctgctgaccagaggggcatactaattgtaaagctgcgtcggggccaagagctcaggctc
cgagcaattgctaggaagggaattggcaaggaccatgccaagtggtcccccgccgctact
gtgactttcatgtatgagcctgaaatacgtatcaatgaagaactcatggaaacattgaca
ctcgaggaaaaacgaaatttggtggagagtagccctacaaaagtgttcaacattgatccc
aacactcaacaggtggtagttgaggatgcagaggcatatacatatgatgatgaggtcatc
aagaaagcagatgccatgggaaagcccggattgatagagatcaatgccaaggaggacagc
tttatcttcactgttgaaacaactggcgctatcacagcttatgagctgatcatgaacgct
atcacggtcttgaggcaaaagttagatgctgttcgtctacaagatgacgatgctgacctt
ggcgagcttggtgcccaccttgttggaggctaa
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