Oryza sativa japonica (Japanese rice): 4346428
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Entry
4346428 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4346428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4346428
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4346428
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SRP_TPR_like
Coatomer_E
RCDG1
RinB
Motif
Other DBs
NCBI-GeneID:
4346428
NCBI-ProteinID:
XP_015612280
UniProt:
A0A0P0XJW7
Q6K272
LinkDB
All DBs
Position
9:join(5801033..5801218,5801909..5801995,5803302..5803478,5803651..5803737,5803811..5803882,5804634..5806508)
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AA seq
827 aa
AA seq
DB search
MEPKEAPPPPPPQSPSSTEEEGMLSVTAAMARDAAVLFQSRRYADCAEVLAQLLLKKEGD
PKVLHNMAIAESFLDGCPDPKKLLEILGNVKRRSEELACASRQQTDSANGTGNSVSSGSR
GSGIIPLISAANNATTYGDEFDTTIITFNTAVILYHLHDYESALSILDPLYRNIEPIDET
TALHVCFLLLDITLALQDASNAADIIQYLERSFGVVSATNQNENANTAQQQSAQPKPSAK
ISTPPDSDSNTCAGGSENLSAGNFSDDTLEFESFYSTLDGGNQNLGRPILNDFSRASADL
AATAADLKVRLQIYKVRLLLLTRNLKVAKRELKVLMNMARGRDSSTELLLKSQLEYARGN
YRKAVKLLSTPNNRSEQAMLAMFYNNLGCILHQQRSIQTSVWCFSKALKYSLSLRSEKPC
KLTAISQDKSCLISYNCGIQHLMCGKPLLAARCFREAMPLLCNRSLFWLRFAECSLLALE
KGILTSSGATSCNDEIEVDVMGSGKWRHLVINPVKPSHSSESGEEVSLDKYGNLISLRFA
RQCLLNAQILLDPSTKENLVIASGTEESNQTSLQGQKGSGQKNTTNTDSKPPGPALTNAN
GEQKGISNLNVTLQSSLALYDDICRKENLKIKQAILGDLAFIELCLQNHLKALSIAKLLQ
QLPECSRMYVFLSHVYAAEALCALNRPKEAAEQLTVYLRDGDDIELPYSIENCEKALVEK
DSDGEDSVAPVVTKLSSGESQYSESLKPEEAQGVLYIDLGMTAAVQGELEQANYMVSRGV
ALLPNNPRAVLASVYVDLLQGKAQEAIAKLRRCRTVRFRRHSVAVSS
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaaggaggcgcccccgccgccgccgccccagtctccgtcctccaccgaggag
gaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttccagagc
cgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggagggcgac
cccaaggtccttcacaatatggctattgcagaatctttcttggatggttgtcctgaccca
aagaaattgcttgaaattctaggcaatgttaagagaagaagtgaagagcttgcctgtgca
tctagacaacaaactgattctgccaatgggacaggaaacagtgtttcttctggatcaaga
gggagtggcattatacctctgatttctgctgcaaataatgcgacaacctatggggatgag
tttgacacaaccataataacattcaacactgctgttatcctttaccatcttcacgattat
gaatctgcactatctattttggatccactctaccgaaatattgaaccaattgatgagaca
actgctcttcatgtatgctttctgttgttggatattacattagctttgcaagatgcatcg
aatgccgcggatataattcagtacttggaaaggtcatttggagtagttagcgcaacaaac
cagaatgaaaatgctaatacagctcagcagcagtcagctcaaccaaagccttctgcaaag
attagcacacctccagattctgattcaaatacttgtgctggtggatctgaaaacctttca
gcaggaaatttttctgatgatacacttgagtttgaatctttttactctaccttggatggt
ggtaatcagaacttgggcagaccaattttaaatgatttctcaagggcttcagctgatctt
gctgccactgctgctgatttgaaagttagactgcaaatatacaaggtccggcttctgctt
cttactaggaaccttaaggttgcaaagcgagaactgaaagttctgatgaacatggcacgt
ggtagggattcatcaacagagcttctcctgaaatctcagttggaatatgccagaggaaac
tatcgcaaggctgtgaagctgctgagcacacccaataatcggagtgaacaagcaatgctg
gccatgttctacaataatcttggttgcatactccaccaacagagatctattcaaacctca
gtatggtgcttcagcaaagcattgaaatatagcttatcacttcgttcagagaaaccatgc
aagctgaccgcaatatcgcaagacaaatcttgtcttatttcatacaactgcggcatccaa
catttgatgtgcgggaaacctttgttagcagctcgctgttttcgtgaagccatgccgctc
ttgtgcaacaggtccctcttttggctccgttttgctgagtgtagcctgctagctctggaa
aagggtatcctgacttcaagtggtgctacttcgtgcaatgatgagattgaagttgatgtt
atggggtcaggaaaatggcggcacttagttataaacccagtgaagccaagtcattcttca
gaatctggggaggaggtaagtttggacaaatatggaaatctgatatcccttagatttgct
agacagtgtctactcaatgcccaaattttattggatccctctacgaaggaaaatctggtg
attgcatcaggcacagaggaatcgaatcaaacatcactgcaaggccagaaaggctcaggt
cagaagaacaccactaatacagattccaaaccgcctggtccagcactaactaatgcaaat
ggagaacagaagggaatttcaaacttgaatgtcaccttgcagagctctcttgctttgtat
gatgacatatgtagaaaagagaacctcaaaattaaacaagccatcttgggggaccttgca
tttattgagttgtgtcttcagaatcacttgaaagctttgtctattgccaagttgctacag
cagctgccagaatgttccaggatgtatgttttcctcagccatgtatacgcagctgaagca
ctttgtgcactgaatagaccaaaggaggctgctgagcaattaactgtttatttgagagat
ggcgatgatattgagttgccttacagcattgagaactgcgagaaagcccttgttgagaaa
gacagcgatggtgaagattcagttgctccggtagtcacaaaattgtcctcaggagaatct
cagtattcagaaagcctcaagcctgaggaagctcagggtgttctttatattgacctaggc
atgacagctgcagtgcagggagagcttgagcaggctaactatatggtaagccgtggcgtt
gccttgttgcccaacaaccccagggcagtgctagcatcagtttatgtggaccttcttcaa
gggaaggcacaagaagcaatcgccaagttgagacgatgtagaactgtgagatttaggagg
catagtgtagcagtcagcagttaa
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