Oryza sativa japonica (Japanese rice): 4346506
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Entry
4346506 CDS
T01015
Name
(RefSeq) protein RDM16 isoform X2
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4346506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4346506
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
4346506
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
DUF7696
Motif
Other DBs
NCBI-GeneID:
4346506
NCBI-ProteinID:
XP_015612127
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All DBs
Position
9:complement(join(8097835..8098696,8098771..8098931,8099022..8099216,8099308..8099706,8099788..8099914,8099989..8100057,8100682..8100713))
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AA seq
614 aa
AA seq
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MEIPGVVWCPMLVLSNRSMLHLLWCHHLFLCLQSTDGSTSSAAGKSSNLSLDALAKAKKA
LQLKKELSEKLKKLPVLNNKLGVTSTDTQIPKKETQPVSSSGASEMAVGAALTEKMAATA
GAVGIPGLANIPNLDAVKRAQELAAKMGFRQDPQFAPLINLFPGTSSELTVPQKPAKAPV
LRLDAQGREIDEHGNVINMTKPTNLSTLKVNINKQKKEAFQIIKPDLDSLAKSSAHFDER
MGINQNKLLRPRRPGFQFIEEGKLSRQAELQRIKNQFGEAQAKELKVKQAQLAKAKAEVV
MNPNLIEVAPGRPPKQKQKEEIPEIEPWDAKILPSTTYDDFSMEKVNMEKITIYVEHPEP
LEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLLEPPKPKVKMSNLMK
VLGAEATQDPTRMELEIRTAAAEREQAHVDRNIARKLTPSERREKKERKLFEDPNTLETI
VCVYRIRDLSHPQTRFKVDVNAQENRLTGAAVIADGISVVVVEGGKKSIKRYNKLMLNRI
DWAAAVDDDDDADEESDKPVNSCALVWQGSVAKPCFTRFSVHNCRSEAAAKKVFADASVP
HYWDLAVNFSEDSS
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagattcccggagtggtctggtgcccaatgctggtgctcagcaaccgctcaatgctg
cacctgttgtggtgccatcatctgttcctatgccttcaaagtacagatggaagtacaagt
tcagccgctggcaaaagtagtaatctatctcttgatgctttagccaaagctaaaaaagca
ttgcaactgaagaaggaactatcagaaaaactcaagaagctacctgtgcttaataataaa
cttggtgttactagtactgatacacaaattcctaagaaagaaacacagcctgtttctagc
tctggtgcatctgaaatggctgtgggtgcagctcttactgagaagatggcagctacagca
ggtgcagttggtattccaggccttgctaacattcccaatttggatgctgtgaagcgagca
caggaacttgctgctaagatgggattcagacaggatccacaatttgcgcctctcatcaat
ttgtttcctggtacatcctctgaactaactgtgcctcaaaaacctgcgaaggcacctgtt
ctccgtcttgatgctcagggtagggaaattgatgaacatgggaatgttatcaacatgacc
aagccaaccaatttgagcactctaaaagttaacataaataagcaaaagaaggaagctttc
caaataatcaaaccagacttggattcccttgcaaaatcaagtgcacactttgatgaaagg
atgggcatcaaccaaaacaagctcctccgccctagaaggcctggatttcagtttattgag
gagggaaaactttcaaggcaagctgagctgcagagaattaagaatcaatttggtgaagca
caagctaaagaacttaaagtaaaacaagctcaacttgcaaaggcaaaggcagaagtagtc
atgaacccgaacttgattgaagttgctcctgggaggcctccaaagcaaaagcagaaggaa
gagattcctgaaattgagccatgggatgcaaaaattttaccttctacaacatacgacgat
ttctccatggagaaggttaatatggaaaaaatcactatatatgtagagcatccagagcca
ctggagccaccagctgagcctgcaccaccaccgcctcagccacttaagctgactaagaag
gagcagaagaaactcagaacacaaaggcgccttgctaaagagaaagacaggcaagaaatg
atcaggcaaggcctcttggagccaccaaagcccaaggtcaagatgagcaatcttatgaaa
gtactaggagctgaagctacacaggatccaacacgtatggagttggaaatacggactgct
gctgcagagcgtgagcaggctcatgtagatcgcaacattgctcgcaagctcactccatca
gagcgccgtgaaaagaaagagaggaagctttttgaagatcctaacacattggagactata
gtttgtgtgtacagaatcagagacctgtcacatccgcagacacgttttaaggtggatgta
aatgcacaagagaaccgtcttactggtgctgcagtcattgcggatgggatcagtgttgtt
gtcgttgaaggagggaagaagtcaatcaaaaggtacaataagctgatgctgaaccgtatt
gactgggctgctgcggttgatgatgatgatgatgctgatgaggaatcagacaagcctgtg
aatagctgtgcattggtctggcaggggagtgtggcaaaaccctgctttaccaggttcagt
gtacacaattgccgtagtgaggctgctgccaagaaggtgtttgcagatgcttcagttcca
cactactgggacctggctgtcaatttctcagaagattcatcttga
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