Oryza sativa japonica (Japanese rice) (RefSeq): 4346519
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Entry
4346519 CDS
T01015
Name
(RefSeq) exosome complex component RRP41 homolog
KO
K11600
exosome complex component RRP41
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4346519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4346519
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
4346519
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
4346519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
4346519
NCBI-ProteinID:
XP_015610638
UniProt:
B9G2C8
A0A8J8XIX4
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All DBs
Position
9:3959833..3965031
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AA seq
242 aa
AA seq
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MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG
QQVNSKDALVRCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQID
IFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGG
PDVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKAIANYIREVLLENTRRLECQ
RG
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgtgaaccctctcaccggcttccgcgtcgacggccggcgccccaacgagatg
cggcagctcaagggcgaggtgggcgtcgtcgccagggcagacggatcggcgctgttcgag
atgggcaacaccagggtcattgccgctgtctacggccctcgagaggtccagaacaaaggt
cagcaagtcaacagcaaagatgctttggtgcgttgtgagtataggatggcagattttagt
actggggatcgaaggagaaagccaaagggtgacaggcgatcaacagaaatttcacttgtt
atccggcaaacaatggaggcaagcattttaacacatttaatgccacgttcacagattgat
atatttgtccaagttcttcaagctgatggtggtacaagggctgcatgcatcaatgctgct
acattagcacttgcagatgctgggattcccatgcgagacattgttacatcttgcagtgct
ggttatctgtgttctactcctttgcttgatctgaattatatagaagacagtgctggaggt
ccagatgtcactgttggctttcttacaaagatggacaaagttactcttctgcagatggat
gcaaaattaccaatggatacatttgaaactgtaatggaccttgcaattgaaggctgcaaa
gctatcgcaaactacatccgagaggtgctattggagaacacaagacggctggagtgccag
cgtggttag
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