Entry |
|
Name |
(RefSeq) exosome complex component RRP41 homolog
|
KO |
K11600 | exosome complex component RRP41 |
|
Organism |
osa Oryza sativa japonica (Japanese rice)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4346519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:osa03019]
4346519
Messenger RNA biogenesis [BR:osa03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
4346519
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
4346519
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
9:join(8306661..8306717,8306812..8306858,8306966..8307026,8307642..8307683,8307761..8307828,8308372..8308450,8308536..8308572,8308899..8309015,8309098..8309183,8309403..8309492,8311263..8311307)
|
AA seq |
242 aa
MEYVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG
QQVNSKDALVRCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQID
IFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGG
PDVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKAIANYIREVLLENTRRLECQ
RG |
NT seq |
729 nt +upstreamnt +downstreamnt
atggagtacgtgaaccctctcaccggcttccgcgtcgacggccggcgccccaacgagatg
cggcagctcaagggcgaggtgggcgtcgtcgccagggcagacggatcggcgctgttcgag
atgggcaacaccagggtcattgccgctgtctacggccctcgagaggtccagaacaaaggt
cagcaagtcaacagcaaagatgctttggtgcgttgtgagtataggatggcagattttagt
actggggatcgaaggagaaagccaaagggtgacaggcgatcaacagaaatttcacttgtt
atccggcaaacaatggaggcaagcattttaacacatttaatgccacgttcacagattgat
atatttgtccaagttcttcaagctgatggtggtacaagggctgcatgcatcaatgctgct
acattagcacttgcagatgctgggattcccatgcgagacattgttacatcttgcagtgct
ggttatctgtgttctactcctttgcttgatctgaattatatagaagacagtgctggaggt
ccagatgtcactgttggctttcttacaaagatggacaaagttactcttctgcagatggat
gcaaaattaccaatggatacatttgaaactgtaatggaccttgcaattgaaggctgcaaa
gctatcgcaaactacatccgagaggtgctattggagaacacaagacggctggagtgccag
cgtggttag |