Oryza sativa japonica (Japanese rice): 4346657
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Entry
4346657 CDS
T01015
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4346657
09122 Translation
03013 Nucleocytoplasmic transport
4346657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4346657
03041 Spliceosome [BR:
osa03041
]
4346657
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
4346657
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4346657
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
4346657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
WDR55
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
eIF2A
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT80_2nd
WD_LRWD1
DUF2121
CNH
Motif
Other DBs
NCBI-GeneID:
4346657
NCBI-ProteinID:
XP_015610692
UniProt:
B9G2Q3
Q69VQ7
LinkDB
All DBs
Position
9:join(11602591..11602701,11603355..11603450,11603971..11604100,11604466..11604554,11605093..11605161,11605558..11605615,11605703..11605814,11606808..11606894,11607126..11607204,11607297..11607429,11607683..11607717)
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AA seq
332 aa
AA seq
DB search
MEGKEDDRRRGGGGGSSTPGMNLKNLVSREYFGHKKKVHSVAWNCLGMKLASGSIDHTAR
VWSIDPHGHSKVKDIELKGHTDCVDQLCWDPKHPDTVATAAADKSIRLWDARSGKCQVVE
LSGENINITYKHGGTQIAVGNKEDELTIVDVRKLKALHKFKFNYEINEIAWNKTGDLFFI
TTGLGNVEVFGDPSLDDTLHVVGKLNAHTAGCYCIGMDPLDRYFAVGSADSLVSLWDVKE
LLCIKTFTKLEWPVRTVSFNHTGEFLAYASEDPFIDIANVQTGRSIHQIPCKAAMNSVEW
NPKYNLLAYAGDDKNKYQADEGVFRIFGFEST
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaaagaagacgacagacggcggggcggcggtggcggaagctcgacgccgggg
atgaacctgaagaacctggtgtcgagggagtatttcggccacaagaagaaggtgcactct
gtagcatggaactgcctaggcatgaagcttgcttcaggctctattgatcatactgcacgt
gtatggagtatcgatccccatggccattccaaggttaaagacattgaattgaaaggccac
acagattgtgtagatcagctctgctgggatccgaagcatcctgatacagttgctacagca
gctgctgacaagtcaattcgcctctgggatgcacggagtggaaaatgtcaagtcgtcgaa
cttagtggagaaaacatcaatatcacttataaacatggtggtactcaaatagctgttgga
aacaaggaggatgagttgacaatagtggatgttcggaagctaaaagcccttcacaaattt
aagtttaattatgagataaatgagattgcatggaacaaaactggagatttattcttcatc
actactggacttggaaatgttgaggtatttggtgatccttcccttgatgacacccttcat
gtggttggcaaattgaatgctcatacagcgggttgttattgcattggaatggatcccctt
gataggtattttgctgttggaagtgcagattcacttgtcagtctttgggatgtcaaagag
ctcctttgcattaaaacctttaccaaactcgagtggcctgtaagaacagttagcttcaat
catactggagagtttcttgcatatgctagcgaagatcccttcattgacattgccaatgtt
caaactggacgatcgattcatcagattccatgcaaggcagctatgaatagtgttgaatgg
aaccccaagtacaacctcctggcttacgcaggagacgacaagaacaagtaccaggctgat
gaaggtgttttccgaatatttggctttgaaagcacataa
DBGET
integrated database retrieval system
