KEGG   Oryza sativa japonica (Japanese rice): 4346657
Entry
4346657           CDS       T01015                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03013  Nucleocytoplasmic transport
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4346657
  09122 Translation
   03013 Nucleocytoplasmic transport
    4346657
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4346657
   03041 Spliceosome [BR:osa03041]
    4346657
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     4346657
Spliceosome [BR:osa03041]
 Complex C
  Other components
   EJC/TREX
    4346657
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    4346657
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR19_1st Beta-prop_WDR3_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd DSE1_N Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_Aladin eIF2A Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_2nd WD40_RFWD3 Beta-prop_HPS5 Beta-prop_Vps41 Tricorn_2nd Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT80_2nd RGM_C WD_LRWD1 TRM82_WD
Other DBs
NCBI-GeneID: 4346657
NCBI-ProteinID: XP_015610692
UniProt: Q69VQ7
LinkDB
Position
9:join(11602591..11602701,11603355..11603450,11603971..11604100,11604466..11604554,11605093..11605161,11605558..11605615,11605703..11605814,11606808..11606894,11607126..11607204,11607297..11607429,11607683..11607717)
AA seq 332 aa
MEGKEDDRRRGGGGGSSTPGMNLKNLVSREYFGHKKKVHSVAWNCLGMKLASGSIDHTAR
VWSIDPHGHSKVKDIELKGHTDCVDQLCWDPKHPDTVATAAADKSIRLWDARSGKCQVVE
LSGENINITYKHGGTQIAVGNKEDELTIVDVRKLKALHKFKFNYEINEIAWNKTGDLFFI
TTGLGNVEVFGDPSLDDTLHVVGKLNAHTAGCYCIGMDPLDRYFAVGSADSLVSLWDVKE
LLCIKTFTKLEWPVRTVSFNHTGEFLAYASEDPFIDIANVQTGRSIHQIPCKAAMNSVEW
NPKYNLLAYAGDDKNKYQADEGVFRIFGFEST
NT seq 999 nt   +upstreamnt  +downstreamnt
atggaggggaaagaagacgacagacggcggggcggcggtggcggaagctcgacgccgggg
atgaacctgaagaacctggtgtcgagggagtatttcggccacaagaagaaggtgcactct
gtagcatggaactgcctaggcatgaagcttgcttcaggctctattgatcatactgcacgt
gtatggagtatcgatccccatggccattccaaggttaaagacattgaattgaaaggccac
acagattgtgtagatcagctctgctgggatccgaagcatcctgatacagttgctacagca
gctgctgacaagtcaattcgcctctgggatgcacggagtggaaaatgtcaagtcgtcgaa
cttagtggagaaaacatcaatatcacttataaacatggtggtactcaaatagctgttgga
aacaaggaggatgagttgacaatagtggatgttcggaagctaaaagcccttcacaaattt
aagtttaattatgagataaatgagattgcatggaacaaaactggagatttattcttcatc
actactggacttggaaatgttgaggtatttggtgatccttcccttgatgacacccttcat
gtggttggcaaattgaatgctcatacagcgggttgttattgcattggaatggatcccctt
gataggtattttgctgttggaagtgcagattcacttgtcagtctttgggatgtcaaagag
ctcctttgcattaaaacctttaccaaactcgagtggcctgtaagaacagttagcttcaat
catactggagagtttcttgcatatgctagcgaagatcccttcattgacattgccaatgtt
caaactggacgatcgattcatcagattccatgcaaggcagctatgaatagtgttgaatgg
aaccccaagtacaacctcctggcttacgcaggagacgacaagaacaagtaccaggctgat
gaaggtgttttccgaatatttggctttgaaagcacataa

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