KEGG   Oryza sativa japonica (Japanese rice): 4347016
Entry
4347016           CDS       T01015                                 
Name
(RefSeq) DNA mismatch repair protein MSH6
  KO
K08737  DNA mismatch repair protein MSH6
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    4347016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4347016
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     4347016
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_IV MutS_II PTM_DIR17_Tudor Tudor_KDM3B nSTAND_NTPase5 LBR_tudor Myc_N
Other DBs
NCBI-GeneID: 4347016
NCBI-ProteinID: XP_015611811
LinkDB
Position
9:join(18755747..18756572,18756649..18756745,18757473..18757575,18757657..18757710,18757793..18757867,18757985..18758053,18758138..18758221,18758413..18758610,18758726..18759225,18759309..18759438,18760524..18760615,18761074..18761252,18761412..18761614,18761696..18761797,18762345..18762507,18762988..18763277,18763386..18763523,18763609..18763688,18763808..18763904,18763983..18764112,18764219..18764460)
AA seq 1283 aa
MASPSSRRLSNGRSPLLRKQSQITAFFSSPTAKPSPSPLNPRATKPPLAVPSPPPPNPPS
PPQEEETAVGRRLRVYWPLDDAWYEGRVEGYDVGSRRHRVRYDDGEEEVVDLASERYEWA
AAADEEEVTPQPSRKLRRLRRMSDAATAKSPGAVDGGGGGDETADSAEEEDEDWKNDAAA
ENDSEEVELDDEEDDEEEVVAVKTRKGKKNNPLSTSASTPKLASGLGSASISGSTLSKKR
RKVDAGALDCAKKFSFEPANTTGKVELKVPISCSQREQPLENALTALTGEVAERFAQRQA
EKFKFLGEGRKDAKGRRPGNPNYDPRTLSLPSQFLNSLTGGQRQWWEFKSQHMDKVLFFK
MGKFYELFEMDAHVGAKELDLQYMKGDKPHCGFPEKNFELNLEKLAKKGYRVLVIEQTET
PEQLDLRRKETGVKDKVVRREICAMVTKGTLTEGESLLANPDPSYLFSVAESYQCGSEKD
QDGHTIGVCIVDVSTSKFIVGQFQDDAERHGLCSILSEIRPAEIIKPAKMLSPETEKALK
SNTRDPLINNLLPSMEFWDAEKTIHEIKQYYCSLDTPGAGAQISSAYLPELLSELIEAGD
KTYALSALGGSLFYLRQSLLDEKLLPCAEFERLTCSGLTNPIRKHMILDAAALENLEILE
NARNGGLSGTLYAQLNHCVTGFGKRLLKRWIARPLYERQAILQRQSAIATFKGSGHECAI
QFRKDLSRLPDMERLLARLFSSCDKNGRSSKSVVLYEDASKRLLHQFTAALRGCQQMFQA
CSSISMLTSTDGSSLLNDLLSLGKGLPHVSSILDHFRDAFDWSEADRNGRIIPHEGCDPQ
YDAACIAIEEIESSLQKYLKEQRKLLSDSSVKYVDVGKDTYLLEVSENLRGSVPHNYELQ
STKKGFYRYWTPEVKELISELSKAEAEKEAKLKCILQNLIQLFVEHHSKWRQLVSVVAEL
DVLISLAIASDFFEGPTCCPIIKESYGPDDTPTLHARNLGHPTLRSDSLGSGSFVPNDIK
MGGPGNASFIVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAESFELSLVDRMFVRMGAR
DHIMAGQSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAASVLEYLVHHVQ
CLGLFSTHYHRLAAENKDSKVSLCHMACEISKGEGGLEEVTFLYKLTPGSCPKSYGVNVA
RLAGIPASVLQRANEKSSDFEASYGKRPGITKNKPSCAQEDKFAAIKDLFRVVKAMHHRE
DHASSLGMLHEVQKRAKVQVIGE
NT seq 3852 nt   +upstreamnt  +downstreamnt
atggcgtcgccgtcgtcgcgccgcctcagcaacggccgctccccgctcctccgcaagcag
agccagatcaccgccttcttctcctcccccaccgccaagccctcgccctcgccgctgaac
cctagggcgacgaagccccctctcgccgtcccctcccctccccctcccaacccgccatcc
ccgccgcaggaggaggagacggcggtggggaggcggctgcgggtgtactggccgctggac
gacgcgtggtacgaggggagggtggagggctacgacgtggggtccaggcggcaccgcgtc
aggtacgacgacggcgaggaggaggtggtggacctcgcgagcgagaggtacgagtgggcc
gccgccgccgatgaggaggaggtgaccccgcagccgtcgaggaagctgcggcggctccgg
cggatgtcggatgccgcaacggccaagtcacctggtgcggtggatggtggtgggggtggg
gatgagactgcggattccgctgaggaggaggacgaggactggaagaatgatgctgcggca
gagaatgattcggaggaggtggagctggatgatgaagaagacgatgaggaggaggttgtt
gctgtgaaaacaagaaagggaaagaaaaataaccctttgtcgacgtcggcttcgacgcca
aaattagcatccggtttgggctcggcttctatttcagggtccacattgtcgaagaagagg
agaaaagtcgatgcgggtgcgttggactgcgctaaaaagttcagctttgaaccagctaat
accactggaaaagtcgaattgaaagtgccaatcagctgtagccagagggagcagccgtta
gagaatgctctcaccgctcttactggagaggtcgccgagcgctttgcgcagcggcaagca
gaaaagtttaaattccttggggaagggcgtaaggatgcgaaagggagacgacccggaaac
cccaactatgatcctagaactctttccttgccttcccagttcttgaatagcttgacaggc
ggacagaggcaatggtgggaatttaaatcacagcacatggataaagttctgttcttcaag
atgggcaaattctatgaattatttgaaatggatgcacatgttggggcaaaggagcttgat
cttcagtatatgaagggtgacaagcctcactgtggattcccggagaagaattttgaattg
aatttggagaaattagctaagaagggttatcgagttctggttatcgagcagactgaaaca
ccggagcagcttgacctccgccgtaaagaaactggtgtaaaagacaaggttgtgaggcgt
gaaatatgtgcaatggtcacaaaaggaacattgacagaaggggagtctctgctggcaaat
ccagatccatcatatctattttctgtggctgaaagttatcagtgtggttcagagaaggat
caagatggtcatacaattggtgtttgcatagttgatgtttcaacaagcaaatttattgta
ggacagttccaagatgatgctgaacgccatgggctatgttctattttatctgagattagg
cctgcagaaatcataaaaccagctaaaatgttgagtccagaaactgagaaagcactgaag
agcaatacgagagaccctttaataaacaatttgcttccatccatggagttctgggatgca
gagaaaactattcatgaaataaagcaatactattgctcattggacacacctggtgccggt
gcacaaatcagttctgcctatctgcctgagctattgagtgagctaattgaagcgggagac
aaaacatatgcactttctgctcttggtggttctttgttttatttaaggcaatcccttctg
gatgagaaattgcttccatgtgctgagtttgagcgccttacatgctcagggctcaccaac
cctatccgcaagcatatgatacttgatgcggcagcattggaaaatctggaaattttagaa
aatgcaagaaatggtggtctctcagggacattgtatgcgcagttaaatcattgtgttact
ggatttggaaaaaggttgcttaaaaggtggattgcaaggccattgtatgaacgccaggca
atactacagcgtcaaagtgccatcgctactttcaagggatctgggcatgaatgtgctatc
caattccgtaaggatctgtctcggcttccagacatggagcgcctacttgcacgccttttt
tctagctgtgataagaatggaagaagttcaaagtcagttgttctttatgaagatgcatca
aagagactgcttcatcagtttactgctgctcttcgtggttgccagcagatgttccaagca
tgctcttctattagtatgttgacaagcacagatggatcttctctattaaatgatttgtta
tcactaggcaaagggctaccacatgtttcttctattctggaccacttcagagatgcattt
gattggtcagaagcagacaggaatggtcggatcatacctcatgaaggttgtgatcctcaa
tatgatgctgcttgcattgcaattgaggagattgaatccagtcttcaaaaatacctgaag
gaacaaagaaagctattgagtgattcatcggtaaaatatgtagatgttggaaaggatacg
tacctccttgaagtgtctgagaacctgcgaggttctgttccccataactatgagttgcag
tctacaaaaaagggtttctatcggtactggacgccagaagtaaaagaattaatatcagaa
ctttctaaggctgaggcagagaaagaggcaaaattgaaatgcattcttcagaatctgatt
caactctttgttgagcatcacagcaagtggagacaattggtttctgtagttgctgagctt
gatgttttgattagtcttgctattgccagtgatttttttgagggaccaacttgctgtcca
attatcaaagaatcatatggtccagatgatactcctactctccatgcaagaaatttaggg
caccccaccctccgaagtgattctttaggcagtggatcttttgtacccaatgacattaag
atgggtgggcctggaaatgccagctttattgttcttactggcccaaatatgggtggaaaa
tcaactcttttgcgtcaagtttgtcttaccataattttggcacagattggagcaaatgtt
cctgctgaaagctttgaactttctcttgttgaccgtatgtttgttcgaatgggagcaagg
gatcatattatggctgggcaaagtacgttcttagtggagctcatggaaactgcttctgtg
ctttcatcagcaaccaagaattctcttgtggctttagatgagcttgggcgcggtacatca
acctctgatggacaagctattgcggcatctgttctagaatatctagttcatcatgtgcag
tgcctaggcttattttcaacacactaccataggttagcagcagaaaataaggatagcaag
gtatcactctgccatatggcatgtgagataagcaagggagaaggaggtttggaagaagtt
actttcctctacaagttaacgcctggttcatgccccaaaagctatggtgtaaatgttgct
cgattggcaggaatacctgcatcagtgcttcaaagggctaatgagaagtcaagtgacttc
gaggccagttacgggaagcgacccggtataacaaagaataagcccagctgtgcacaggag
gataaatttgccgccatcaaggatctgttccgcgtcgtgaaggcaatgcatcatcgggag
gatcatgcatcaagtttaggcatgctccatgaagtgcagaagcgtgctaaggtgcaggtc
attggagaataa

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