Oryza sativa japonica (Japanese rice) (RefSeq): 4347029
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Entry
4347029 CDS
T01015
Name
(RefSeq) transcription initiation factor TFIID subunit 2
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4347029
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
osa01002
]
4347029
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4347029
03036 Chromosome and associated proteins [BR:
osa03036
]
4347029
Peptidases and inhibitors [BR:
osa01002
]
Metallo peptidases
Family M1
4347029
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
4347029
Coactivators
SAGA/TFTC/STAGA complex
4347029
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
4347029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
4347029
NCBI-ProteinID:
XP_015611872
UniProt:
B9G3J0
LinkDB
All DBs
Position
9:14530902..14548031
Genome browser
AA seq
1503 aa
AA seq
DB search
MAKARKQKGEEQKPDGGGAGGGGGGATVLHQKLCLSIDMENRLIYGYTEIKVQAENDTFA
LHADNMTIRNILVDGQAAEFEYSPQWKNAGDQQSWSSVSCSKTAADAACSVYISSLNSEA
APNLIISSERSSKAITEPQYEENGENHEENGEKHEENGEKQNENGEKCEENGGKPAQISD
DQAVNGCNGSADKKDKEEETEKDNEKEKEDKEEETEKDNEKEKEDKEEETKKDNEKEKEQ
LMGTDEKEKEKEKEDENEEEKLEEEEKKDKEEKLEEKEKENEEENGNEKDKENDNEIEKV
KNTKLVHIDYILEKAETGLYFTGNILHSNNQIRRAHCWFPCIDSATQRCPFDLEFTVSTN
LVAVSNGDLLYQVLSKEDPPRKTYVYKLSTPVSAQWISLVVGPFEVLPDRNDISVSHMCL
SQSLSKLENTISFFHSVYSCYEDYLAASFPFGLYKQVFLPPEMIVSPTSLGASTCIFNSD
ILHDEKVIDQIIDTRIKVAYALARQWFGIYTNAEEATDEWLLDGLAGFLTEHFVKRYLGN
NEARYRRFKANCIVCEFDVSGATALSSPSASSDLFGTQTIGSYGKIRSLKAVSVLQMLEK
QMGPDSFRKILQMIVAPTRASRTLSTKEFRHLANKVGNLERPFLKEFFPRWVESSGCPVM
RLGISYSKRRNLVELAVSRGCTTKVDPGPDIRTNGDSREGDTGWPGMMSVRVHETDGVYD
HPIVPMAGEALQVVEIQCHSKVAAKRFQKTKKGSKPDGSDENIDASNQDNRASMDAPLLW
IRVDPEMEYLAEIHFHQPVQMWINQLEKDKDVISQSQAISVLEKSPQLTFAVTNALNNFL
NDTKAFWRVRVEAAYALAVTASEGTELTGLLHLVKFYKSRRFDADIGLPRPNDFHDIPEY
FVLEAIPHAVALVRSADKSSPKEAIEFILQLLKYNDNNGNVYSDVYWLSAMVQAIGELEF
GQQGVGLLSSLLKRIDRLLQFDNFMPGYNGVLTVSCIRTLARIAQRVSSSICLDRVCELI
VPYRNMDKPWKVRMEAGRVLIDLEFHHKGLDAALLLFLKYANEERSLRGGTKLAVHVLRL
CQANIESHDNNQIQLPTLVGLLCLLAGKKAYNNVYLRHNVFCILQIAAGRSPTLHGVPKV
VTPPQVVLEISSDQHTKADSSVPQQSRPQEPSTSTPSVREVLPTSGPLKDADNISNCSER
RNVIFIPTKDADNISNCSERRNVISIPTKDADNISNCSERRNVVKIRVKRASSSSKADDA
DHRDHSHGRNENEAGPCSSMSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNSCHDRESR
MSASIGNVKLMDKHEVSKELQCTADSRLDALPKDHFSPVVNGQEVLDKPRSQLEVVSTSY
DGNQAPDSMNGLETKEKKKDKKDKKRHRDKKDDPEYLEKKRLKKEKKRMEKEKGKKQKEG
EGVSSSEQKNTAKPSDSQGTSSARPPAPMRIPEPKISNVGTPVDTTRTLTTTKIRIKVKP
LQR
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggcgaggaagcagaagggcgaagagcagaagcccgacggcggcggggctggc
ggcgggggagggggcgccaccgtgctccaccagaagctgtgcctctccatcgacatggag
aaccggctgatctatgggtacactgagataaaagttcaagctgaaaatgatacttttgct
ctgcatgctgacaacatgacgattaggaacatattagtggatggtcaagctgctgagttt
gagtattctcctcagtggaaaaatgctggtgatcaacagagttggtcttcagtatcatgt
tcgaagactgctgctgatgctgcatgctcagtatatatctcttctctaaatagtgaagct
gcacctaatctcatcatctcgtcagagagatcaagcaaggcaataactgagccacagtac
gaagaaaatggtgaaaaccacgaagaaaatggtgaaaaacatgaagaaaatggtgaaaaa
caaaatgaaaatggtgaaaaatgtgaagaaaatggtgggaaacctgctcaaatatctgat
gatcaagctgttaatggctgcaacggttctgctgataagaaggacaaagaagaggaaact
gagaaggacaatgaaaaagaaaaggaggacaaggaagaggaaactgagaaggacaatgaa
aaagaaaaggaggacaaggaagaggaaactaagaaggacaatgaaaaagaaaaggagcag
ctaatgggaactgatgagaaggagaaggagaaggagaaggaggatgagaatgaggaggag
aagttggaggaggaggagaagaaggataaggaggagaagttggaggagaaggagaaggag
aatgaagaggaaaatggaaatgagaaggacaaggaaaatgataatgaaattgaaaaggtg
aagaacacaaaactggttcacatagattatattttggagaaggctgaaactggactttac
ttcactggcaacatcttacatagtaacaatcaaataaggcgtgcacactgctggtttcct
tgcattgatagtgcaacacagcgctgtccatttgacctagagttcacagttagcacgaat
ctagttgctgtcagtaacggtgacttgctttaccaggtcttaagcaaggaagatcctcca
agaaaaacatatgtgtataaattgagcactccagttagtgcacagtggatatctttggtt
gttggtccatttgaagttcttcctgacaggaatgacataagtgtatcacacatgtgctta
tctcagagtttatcaaagcttgaaaataccatctcatttttccacagtgtctacagctgt
tatgaagattatcttgctgcatcatttccttttggactatacaaacaggtttttcttcca
cctgaaatgatagtatcaccaacaagcttaggagcttccacttgcatcttcaattcagat
atcttacacgacgaaaaggttatagatcagataattgacacgagaatcaaagtagcatat
gctcttgcaaggcaatggtttggcatatacacaaatgcagaggaggcaaccgatgagtgg
ttattggatggtttggctggttttctcactgagcattttgtcaagcgttatcttggcaat
aatgaggcacgatataggcgtttcaaggccaattgcattgtgtgtgagtttgatgtcagt
ggtgcaactgctttgagctctccttcagcttcaagtgatttatttggaactcaaacaatc
ggttcatatgggaaaattcgttctttgaaggcagtatctgttcttcaaatgttggagaaa
cagatggggccagactcttttcggaagattctgcagatgatagttgctccaactcgtgcc
tcaagaacactaagtacaaaagagttcaggcatcttgcaaacaaggtcggtaatcttgaa
cggccattcctgaaagaattcttcccaaggtgggttgaatcttctggatgcccagttatg
agattgggaatctcctatagcaagaggagaaacttggttgaattagctgtttcacgtggt
tgcaccacaaaagttgatcctggtcctgatattcgcacgaatggtgattctcgagaaggt
gatactggatggccaggaatgatgagcgtacgtgtccatgaaactgatggagtgtacgat
catccaattgtacccatggctggtgaagctttgcaggtggtggaaatacaatgtcattcc
aaagtagcagcaaagcgctttcagaaaactaaaaaaggctcaaagcctgatggttctgat
gaaaacatagatgcttcaaatcaagataaccgtgcgagtatggatgcacctttactgtgg
atcagagtggacccagaaatggagtatctcgctgagatacattttcaccagcctgtgcag
atgtggatcaatcaattggaaaaggacaaagatgtcatttcacaatcacaagcaatatct
gtactggagaaatcacctcaactcacttttgctgtgactaatgccctcaataatttctta
aatgatacaaaggcattttggagagttagagttgaagcagcatatgctttagctgtaact
gcatcagagggcacagaactaactggactgcttcatctggttaagttctataaaagccgc
cgatttgatgcagatattggattacccaggccgaatgacttccatgatattccggagtac
tttgttcttgaggcaattcctcatgcagtagctcttgttagatcagcagacaagagcagc
ccaaaagaagccattgaatttatccttcagcttctaaagtataatgataacaacggaaat
gtatactctgatgtctactggctatctgcaatggtgcaggcgataggtgaattagaattt
ggccagcagggtgtaggtctattgtcgtctcttctcaagcgcattgatcggctcctgcaa
tttgataactttatgcctggatacaatggggttttgactgtcagctgcattcgcaccctt
gcacgtattgcacagagggtgtcatcttccatttgccttgatcgcgtctgtgaactaatt
gtgccctatcgcaacatggacaaaccatggaaagttcgaatggaagctggcagggttctt
attgatctcgagtttcaccataaaggacttgatgcagctcttttattattcttgaaatat
gctaatgaagaaagatctttgagaggagggacaaagttggctgttcatgtcttgcgtcta
tgccaagccaatattgaatctcatgataataatcaaatacaattgccaactctagttggc
ctcctttgcctgcttgctggcaaaaaggcctacaacaatgtatatcttcgacataatgtg
ttctgcatattgcaaattgctgctggaaggtctccaacactgcatggagttccgaaggtt
gtcactccacctcaagttgtcctggagatatctagtgatcagcacactaaagctgattcc
tcagttcctcaacaatcaaggcctcaagaaccttccactagcactcctagtgtccgtgaa
gtcttacctacctctggacccttaaaagatgcggataatatatctaactgcagtgagaga
aggaatgttatttttatacccacaaaagatgcggataatatatctaactgcagtgagaga
aggaatgttatttctatacccacaaaagatgcggataatatatctaactgcagtgagaga
aggaatgttgtcaaaataagggttaaacgtgcttcatcatccagtaaagcagatgatgct
gatcacagagatcattcacatggtagaaatgaaaatgaagcaggtccatgtagctctatg
tcagtggatgcacctatgactgaagcaccagaaccagtaaatgtaagtaatcataacatc
gaggagcaaaactcatgccatgatagggaacaaaactcttgccacgatagggaatcaagg
atgtcagcaagcattggcaatgtcaaactaatggacaagcatgaagtatccaaggagcta
cagtgcacagccgattccaggctagatgctctccccaaggatcacttctctcccgttgtt
aatggacaggaagtcctagacaagccacggagtcagctagaagtagtctccacaagctat
gatggaaatcaagccccagactccatgaatggattggaaacgaaggagaagaagaaggac
aagaaagacaaaaagcggcatcgagataagaaagatgatcctgagtatctggagaaaaaa
cggcttaagaaagagaagaaaaggatggagaaagaaaaaggcaaaaagcagaaggaaggt
gaaggggtttcttcttccgaacagaagaacacagcgaaaccttcagactcgcaaggaacc
tcatcggcaaggccaccagctccaatgcgaattcctgaacccaagatatcaaatgtgggt
acgccagtagatactacacggacattgacaactactaagattaggatcaaagtcaagcct
ctgcaaagataa
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integrated database retrieval system
