Oryza sativa japonica (Japanese rice): 4347240
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Entry
4347240 CDS
T01015
Name
(RefSeq) nuclear pore complex protein NUP58
KO
K14307
nucleoporin p58/p45
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4347240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4347240
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
4347240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF7217
Motif
Other DBs
NCBI-GeneID:
4347240
NCBI-ProteinID:
XP_015651208
UniProt:
Q0J1A6
Q67UZ2
LinkDB
All DBs
Position
9:complement(join(21389770..21389802,21389960..21390000,21390499..21391003,21391256..21391696,21393978..21394092,21394711..21394979))
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AA seq
467 aa
AA seq
DB search
MAFSFASPAPQNPFQTPAQAPSLSPSPFQFNLQQPQQQQQQPPPQQQAAPAAQPQQQQLM
LYTTDGKPAGYNTKWEELHAESQKALLQIEDKIREYRDESERLDQCSRLHDSSISTVNFE
NDASEIAQELGGTTTMMEREKASVQELMTVVNEMMRNTEFAIRSYMMLRPRFIRPGAGAN
GGGSNPSGPAGAQSNQPVALAPTIDFYSGIPKRPSHFMQQTINRFEKYLGECCKWIAELE
QLVQMENNKRQSASLESLPKVMSNVHDYFIYVASKVENLHQYVESLKTEYLHEQRRLGNA
NDPFLEANRREAAKQEAAARRVHPTLHLPAPVQPTTQIAGTVTSQPQQSLIPSGATSSSA
FPSFSTPASAPSSSSLFSTPTTPTLSSNLFGTSGSAQLSTPFGTVSTPTLGSTPAPSGFG
NTTPSFASTPALGGTSLFSTPFGGGATASGSSFGGTSKVRSKPRGRR
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcgttctccttcgcctcaccggcgccgcagaatccgttccagacgccggcgcaggcc
ccgtccctgtctccttcgccgtttcagttcaacctgcagcagccgcagcagcagcagcag
cagccgccgccacagcaacaggcggcgccggccgcgcaaccgcagcagcagcagctgatg
ctatatacgacggacgggaagcccgcggggtacaacacgaagtgggaggagcttcacgcc
gagtcgcagaaggcgctgctccagatcgaggataaaataagggagtacagggacgagagc
gagaggttggatcagtgttctcgccttcatgactcttcaatctcaactgtcaattttgag
aatgatgcaagtgaaattgctcaggaacttggagggacaaccaccatgatggaaagagag
aaggcttccgttcaagagttaatgactgttgtgaatgaaatgatgcgaaacacagaattt
gctattaggtcatatatgatgctgagaccaagatttatccgtccaggtgctggagcaaat
ggtggtggctcaaatccttctggtcctgctggagctcagtccaatcagccagtagcattg
gctccaaccattgatttctatagtggtatcccaaagcggccttcccattttatgcaacag
actatcaacaggtttgagaaatatcttggagaatgctgcaagtggatcgcggagctagag
cagcttgttcaaatggagaacaataaaaggcaatcagcctcattagaatctctaccgaag
gttatgtcgaatgtgcatgattatttcatctatgttgcttctaaggtggaaaatcttcat
caatatgttgagtcattgaaaactgaatatctacatgagcagcggcgattgggtaatgcc
aatgatccatttttagaggcaaatagacgagaagcggctaaacaagaagcagctgccaga
agggtacatccaacattgcatttgcctgctcctgtacagcccacaactcaaattgctgga
acagtgacgagtcaaccacagcaatcattgattccttctggagcgacttcttcaagtgct
tttccatcattcagcactccagcttccgctccatcttcttcaagtctcttttcaactcca
acaactccaactctatccagcaacctttttggtacatctggatcagcccagctgtccaca
ccatttgggacagtctctactccaacgcttggatcaacgccggctccatctggatttggg
aatacaactccatcttttgcttcaacgcccgctttaggtggaacctcactgttttctacg
ccgttcggaggtggagctacagcttcaggatccagctttggtggtacatctaaagtgcgg
tcaaaacctcggggccgacgctag
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