Oryza sativa japonica (Japanese rice): 4347500
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Entry
4347500 CDS
T01015
Name
(RefSeq) E3 ubiquitin-protein ligase RNF4 isoform X1
KO
K22651
E3 ubiquitin-protein ligase RNF4 [EC:
2.3.2.27
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4347500
Enzymes [BR:
osa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
4347500
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
4347500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_10
zf-rbx1
RING_XB3-XBAT31
Zn_ribbon_6
zf-RING_4
Prok-RING_4
zf-RING_6
Rtf2
zf-ANAPC11
Sina_RING
zf-P11
zf-Nse
DUF1272
TRAF3_RING
FYVE
Motif
Other DBs
NCBI-GeneID:
4347500
NCBI-ProteinID:
XP_015611765
UniProt:
B7EMU6
A0A5S6R9Z1
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All DBs
Position
9:complement(join(23914791..23915006,23916144..23916217,23916415..23916484,23916740..23916955))
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AA seq
191 aa
AA seq
DB search
MSTVSGTRRAPRRQSQDGPGDKVVVNLDAISSPVVGSRRAVPTSTGARASPIDVEALDDE
VQTLSASQVPPPRRNRRTRRQPVAVVDLEVDASREGNKRQRVAPVIHCLSPERGEGSSLK
TSNEPPKAKEPVFNCPVCWNKLEEPSTTICGHIFCTTCIKQAIQIQKKCPTCRKSLRANN
FHRIYLPNSDS
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgtcagcggcactcggcgtgccccaaggaggcaatcacaagatggtcctggt
gataaagtcgttgtgaacctggacgcgatctcctccccagtggttggaagccgtcgcgcg
gtgccgacctccactggtgcgcgcgcctcccccattgatgtggaagctctggatgatgaa
gtgcagacattgtccgcttcgcaagtgcctcctccgagaaggaaccggagaactaggagg
cagcctgtggcagtagttgatctggaagtagatgctagccgggaagggaacaaacgtcaa
agggttgcacctgttatacactgcctctctccagaaaggggagaagggtccagcttgaag
actagcaatgagcctcctaaggcaaaggaaccggtttttaactgtccggtgtgttggaac
aagttggaggagccctccacaacaatttgcggccatatcttctgcacgacatgcatcaag
caagccatccagattcagaagaaatgccctacttgcagaaagagtctgagggcgaacaat
ttccaccgtatttaccttccaaactctgatagttaa
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