Oryza sativa japonica (Japanese rice): 4347689
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Entry
4347689 CDS
T01015
Symbol
P0569E11.1, TFIIB
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4347689 (P0569E11.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4347689 (P0569E11.1)
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
4347689 (P0569E11.1)
Prokaryotic type
Archaeal type
TFB
4347689 (P0569E11.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
Zn_ribbon_3
WHD_GDS1
DUF7573
RB_B
Motif
Other DBs
NCBI-GeneID:
4347689
NCBI-ProteinID:
NP_001390862
LinkDB
All DBs
Position
9:join(25471085..25471437,25472272..25472296,25472619..25472748,25472842..25472972,25473055..25473143,25473528..25473604,25473680..25473813)
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AA seq
312 aa
AA seq
DB search
MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG
GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG
LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK
KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEEL
DIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTY
AKEEDLKNLCTP
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgagcgactcgttctgcccggactgcaagaagcacacggaggtggcgttcgaccactcg
gcgggggacacagtgtgcacggagtgcggcctcgtcctggaggcgcactccgtcgacgag
acctccgagtggcggacgttcgccaacgagtccagcgacaacgaccccgtccgtgtcggc
ggcccgaccaacccgctcctcaccgacggcggcctctccaccgtcatcgccaagcccaac
ggcgcccagggggagttcctctcctcctccctcggcaggtggcagaaccgcggctccaac
cccgaccgctccctcatcctcgccttccgcaccatcgccaacatggccgacaggttaggt
cttgtggctacaatcaaggaccgagccaatgaaatatataagaaggtggaagatctcaag
tctatcaggggaagaaatcaagatgccatattagctgcctgtttgtatattgcttgtaga
caagaggatcggcctagaactgtaaaagaaatatgttcggtcgctaatggagcaacaaag
aaagagataggccgagcaaaggaatttatcgtgaagcaactggaagttgaaatgggtcaa
tctatggagatgggaaccatccatgctggagatttcctgaggcgtttctgttcaactctt
gggatgaacaatcaagctgttaaagcagcccaggaagcagttcagcgttcagaggaactt
gatataaggaggagtcctatttccattgcggctgctgtcatttacatgataacccaactc
tcagatgataagaagcctctgaaagacatatccttggctactggtgtggcagaaggtacc
atcagaaattcatacaaggatctgtatccctatgcttcaaggctcatcccaaacacctat
gccaaggaggaagacctgaagaatctgtgcacaccatag
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integrated database retrieval system
