Oryza sativa japonica (Japanese rice) (RefSeq): 4347791
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Entry
4347791 CDS
T01015
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4347791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
4347791
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
4347791
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
4347791
FA (Fanconi anemia) pathway
Downstream FA components
4347791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DUF4230
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
4347791
NCBI-ProteinID:
XP_015612512
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All DBs
Position
9:complement(21860320..21877821)
Genome browser
AA seq
1289 aa
AA seq
DB search
MGAATADEDFATPPPPARAPGGRVYQVGGVPVEFPYKPYGTQLAFMGRVIATLDRARRQG
RSHALLESPTGTGKSLSLLCSALAWQRHYPLRAPPAAAPDPFLHGGGFVPDDTQKQATPG
VPEKATRKKNVPTIYYATRTHAQITQVVREYRKTSYRVRMAILASRKHYCVNKNVCMSGN
IDELCKSLLDDSAQGCPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGRKVKGCPYFAA
QTMAEAAQLVFCPYNYLISPIVRRAMDIDIRGSIIVLDEAHNIEDIARDAGSFDVDEESL
LFLRQELEGLVTDEAVAKIYEPLHEVIQGLNGWIDEQGNNLQKNEFEHPASFWTGEEAMK
ELKYAGITPVNFPVLQECATKAIKAASDAESEGVHLSGGSAMTLESLFSSLSYFFAENGR
HSNDYQLALQRFAKREGNSVTSFIGWKCVMSLWCLNPAVVFRDIADLTLSVILTSGTLSP
MGSFASELGVQFEACMEAPHVINADSQVFATVLSSGPTGRRLNASYRTANEYSFQDELGA
TLEEICRVVPGGALVFFPSYNLLEKLQRRWSQTGQWARLEAQKHVCVEPRGSTEELEPVL
KGYYNAILGKAPPKKGRGGAKQIVKNRVTKDSSQESAKGGAAFLAVCRGKVSEGIDFSDD
KARVVVIVGIPFPNINDVQVKLKKRYNDSYKSSKDLLSGNEWYCHQAFRALNQAAGRCIR
HKFDYGGIILIDERYQEERNIVYISKWLRNSIRNCGTFQETMDGLTRFFQNAEEQIKIKA
QGVSPKDRLDACVLPSQGDKRKLPWPEPNFSNQTVLQNNKDVKSESHIDGAGVDRMKLSD
TSSESWHLSSKHSGLVKKQISPEPENVPMACQLPPSYKVQYNLEGEADNGTNYEVNINFI
DLEECDTKPRYVKLTIFNPSEHITQQSTVMEETYAEVPIASPSNRNGENASTVMNEGDPV
LDLPISLSAANRNISCVSTSAATPERSGSISHLEHESWTNRSVNSHCQKRRKLSSPMSCC
TYTERSCSPSKPYLHGGCDVSMLPGDLRTDGMCCKSMKMSRCENVKVERNSKLAEFPSRE
STQEKLFICCARCKTALGLQEDGFLVSCSSSLSSKFYLTYLWRHGPSADILPGKDFLASP
PLKIKVMVCNVSSVNKMMLGNLSNEGSAHNSSFWSEKDGCVYKPVTCQTCSCKNACVTTL
GAQVVATDSSNQQFCDKVILFDDLLHVKHGPSKDQALSAPIGTVKPISPPPVIDLESFAY
KPLKKDPVPVNTRRSKLRLPGTAKSRNGA
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccgccacggcggacgaagacttcgccaccccgccgccgccggcgcgggcgccc
ggcggcagggtgtaccaggtgggcggcgtgccggtggagttcccgtacaagccgtacggg
acgcagctcgccttcatgggccgcgtcatcgccacgctggaccgcgcgcggcggcagggc
cgctcccacgcgctcctcgagtcgcccaccggcaccggcaagtcgctctccctcctctgc
tccgcgctcgcctggcagcgccactacccgctgcgtgccccgcccgccgccgcccccgac
ccgttcctccacggcggcggcttcgtccccgacgacacccagaagcaggcgacgcccggc
gtcccggagaaggcgaccaggaagaagaatgttccgaccatctactatgcgacgaggacg
cacgcgcagataacccaggtggtccgggagtaccgcaagacgtcataccgagttcgcatg
gccatcttggcctcaaggaagcactactgtgtcaataagaatgtgtgcatgagtggcaac
atcgatgaactatgcaagtcactccttgatgacagtgctcaaggctgtccagaatacaag
aatgcacagaaactaagtcgccatccatcccttcagattggtggctgctatgaagttcat
gatattgaggatctcgttagagttggacggaaagtgaaggggtgcccatattttgctgca
caaactatggctgaggcagctcaactggttttctgcccatataactatctgattagtcca
atcgtgaggagagcaatggacattgacataagaggctcaatcattgttcttgatgaggct
cacaacatagaagacatagcacgtgatgctggaagttttgatgttgatgaagaatcactt
ctctttttgcggcaagaactagaagggttagtcactgatgaggctgttgcaaagatatac
gaacccttgcatgaagttattcaggggcttaatggttggattgatgagcagggaaataac
cttcaaaagaatgagtttgagcatcctgcttcattttggactggtgaagaggctatgaag
gaactcaagtatgctggcattactcctgtaaacttcccagtattgcaagagtgtgcaaca
aaggctattaaagctgcttcagatgctgaatcagaaggagtgcacttaagtggtggttca
gctatgacactagagagtttgttctcctcattgagctacttttttgctgagaatggacgc
cattcaaatgattaccaacttgctttacagcgttttgctaaacgtgaaggcaattctgtc
acttctttcattggatggaagtgtgtgatgagtctgtggtgtctcaatcctgctgttgtt
tttcgagacatcgcagatctaacactttcagtaattctcacatctggcacactctctcca
atgggatcctttgcatctgaacttggtgtccagtttgaagcttgcatggaagctcctcat
gtaatcaatgctgattctcaggtttttgcaactgtgctatcatctggcccaacaggacgt
cgactgaatgccagttatagaactgcaaatgaatattctttccaggatgaacttggagct
acactagaagaaatatgcagagtagtgcctggtggtgctcttgtgttttttcctagctac
aatttgttggagaaacttcaaaggcgctggtctcagacaggtcaatgggcacgattggag
gctcaaaagcatgtatgcgttgagcctagaggaagtaccgaggaacttgagcctgtccta
aaaggatattacaacgcaatccttggcaaggctcccccaaagaaaggcagaggtggtgca
aaacaaattgtgaaaaatcgagtgacaaaggattcatcacaggagtctgctaaaggaggt
gctgcttttcttgcagtttgtcgtggaaaggtatctgaggggattgacttctctgatgac
aaagctagagttgtggttattgttggcattccatttccaaatataaatgacgttcaagta
aagctcaaaaagagatataatgattcatacaaatcatcaaaagatttgttgagtgggaat
gaatggtactgccatcaagcatttcgtgctctgaatcaagctgcaggtcgatgcattcgc
cataaatttgattatggagggataattttgattgatgagcgttatcaggaagaaagaaat
attgtgtatatttctaaatggcttaggaattcaattaggaattgtggtactttccaggag
acaatggatggattgacaaggttttttcaaaatgctgaggaacaaataaaaatcaaagct
caaggtgtgtcccctaaggacagattggatgcttgtgtactcccatctcaaggcgataaa
agaaagctgccatggccagaaccaaatttctcaaaccagacagtactgcaaaataataag
gatgttaagagtgaaagccacattgatggtgcaggagttgaccgtatgaagttgtctgat
acatcatcagagtcatggcatctctcttcaaaacattctggtttagtaaagaaacaaatc
tccccagaaccagaaaatgtgccaatggcatgccaactccctccctcatacaaagttcaa
tataatttagaaggtgaagcagataatgggacaaattatgaagtaaatataaacttcatt
gacttggaagagtgtgatactaagccacggtatgtgaagttaactatctttaatccttca
gaacacataacacaacaatctactgttatggaagaaacttatgcagaggtgccaattgct
agtcccagtaaccgaaatggggaaaacgcctctacagtgatgaatgaaggagatccggtt
ttagatctgcccatttcgctttcagctgctaacagaaacatttcttgtgtgtccacatcg
gcagctactcctgaaagatcaggtagcattagtcatttggagcatgaatcttggactaac
agaagtgtgaattcccactgccagaaaaggagaaagttaagctcccctatgagctgctgt
acctacacagagcgttcatgttctccaagcaaaccctacttacatggtggttgtgatgta
agcatgttgcctggagatctgagaactgatggaatgtgttgcaagagtatgaaaatgtca
agatgtgaaaatgttaaggttgaaagaaacagcaagcttgcagagttcccatcgagggaa
tctacgcaggagaagcttttcatttgttgcgctagatgcaaaacagcacttggattacaa
gaggatggctttcttgtttcatgctcatcgtctttgtcctcaaaattttacttgacatat
ctttggagacatggaccatcagcagatatccttccaggaaaagattttttggcatcacca
cccttgaagataaaagtgatggtgtgcaatgtatcttcagtgaacaagatgatgcttggc
aacttgagcaatgaaggttctgctcataattctagtttttggtctgaaaaggatggatgt
gtgtacaagccagtaacttgtcagacttgctcttgcaaaaacgcctgtgtcacaaccctc
ggagcacaagttgttgcaactgattcgtcaaatcaacaattttgtgataaggtaattttg
tttgatgatcttctgcatgtcaagcatggaccgtcgaaggatcaggctttaagtgctccc
ataggtactgttaaacccatctcacccccgccagtgattgatctcgagtcctttgcgtac
aaaccactgaagaaggatcctgtgccggtgaacacaagaaggtccaagcttaggttacct
ggcacagccaaatccaggaatggtgcataa
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