Oryza sativa japonica (Japanese rice): 4347878
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Entry
4347878 CDS
T01015
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4347878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4347878
03019 Messenger RNA biogenesis [BR:
osa03019
]
4347878
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
4347878
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
4347878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2_11
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
4347878
NCBI-ProteinID:
XP_015611603
UniProt:
Q0IZJ8
A0A0P0XQZ9
LinkDB
All DBs
Position
9:complement(join(27012342..27014174,27014430..27015002,27015102..27015233,27015436..27015693,27015843..27015944,27017298..27017609))
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AA seq
1069 aa
AA seq
DB search
MRASAAPMETSASARRSAAPDPKKPRLAQHPAPRDPRSYPAAANGNAPAVDQAQVDELVA
QYRTALGELTFNSKPIITNLTIIAGENLHAAKPIASLICANILEVPSEQKLPSLYLLDSI
VKNIGKDYVKHFSARLPEVFCKAYKQVDSSIHNSMRHLFGTWKGVFSPTSLQVIEKELGF
QSSTNGSSGAAPSKPDSQSNRPSHSIHVNPKYLEARQQLQQPNKGQGILGAGAKTTTISD
SGDDIERTSRTAVDRGAGRRLDALNPRTNVQRAQRDPFSNPIHEKQDRDMRVLGFSNISQ
QAVVGTGLVRAKPKGQDGSGGPYYTAGVGSSEEQFDRRSNFYANKDVRPSGSVRLDGALL
PTPVSNSDRIGRPSSNKSWKNSEEEEYMWDDVRSQGADYGGTSSTRKREWIPDDGNVGSF
QRVKWAEAGGPLDPDQHKLDSFQRFGNATGQDRRITPYMDHEEYLHGKHEVEPRIDREML
PEGQPFSSSRGSSLWLSHEKPLPDIVSDPRISAFSNQPADRPTIYAGTLSTSITSSVPVG
LSAAYAGRSSLESAATRSTETIGQQKNRYWSTSSPPVQSPSASFARQSSPSPVELDYSSK
PFSQLGQNSLEDYNQRTHALAQNLALSQGRPNLLGAPSHASQQIEKHPSLLQSKPHLRTL
DQPQANFSPENSSSVFKSSIQLPISVGVGHRQPEEVSLSSDSTLMSSDHLSASSLLAGLI
KSGFKPNDPNDLASLRAQPPLPSGPPPHVSTSFSAASSSLHLPASDTLKSQAPNSLRPPL
PPGLPLSSPFVCPTTQTSEKAAPLSSLLSSLVAKGLISSPSADSTVAIPQQPCKSELNTP
DDTASAPSLPFVQPSVKKETSNQNSSAPSKVLVHQPVEIKKEPAEIKMVDLIGFDFKPEM
LRKYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVHTACHGSKQSETRKTGIAPEKWYPS
KNNWVDRSHEVQNSALESASSVADLSSEEEVCEFMVPADESQIICALCGESFDDIYSIEK
DNWMYKDAVYFDSSKTEGSSGDSAESKERVPIVHARCMSISSNDGMEVD
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcctccgccgcccccatggagacctccgcctccgcccgcagatccgccgccccc
gaccccaagaagcctcgcctcgcccagcaccccgcccccagggatcccagatcttacccc
gctgccgccaatggcaacgcccccgccgtcgaccaggcgcaggtggacgagctcgtcgcg
cagtaccggaccgccctcggggagctcaccttcaactccaagcccatcatcaccaacctc
accatcatcgccggcgagaacctccacgccgccaagcccatcgcctctctcatctgcgcc
aacatcctcgaggttccaagtgaacagaagctaccatctctgtatctacttgacagtatt
gtcaaaaatattggaaaagattatgttaaacatttttctgcaagattacccgaggtgttc
tgcaaagcatataaacaggttgattcttccatacacaatagcatgagacacttatttgga
acatggaaaggagtgttttccccaacttcactccaagtgattgagaaggaacttggcttt
caatcatctactaatggatcatcaggcgctgcaccatcaaagcctgattctcaatccaat
cgtccatcccacagcattcatgtgaacccaaaatatttggaagcaaggcagcagctccag
caaccaaataagggacaggggatactgggagctggggccaagactactacaatttccgat
tctggtgatgatattgagaggactagcaggacagctgttgatagaggtgcagggcggcgg
ctggatgctttgaaccctaggactaatgtacagcgggcacaaagggacccttttagcaat
cctattcatgaaaagcaagatagagatatgagggtccttggattctccaacatttcgcag
caggctgttgtgggaactggtcttgttcgtgcaaaacctaaaggccaagatggaagtggc
ggaccatattatactgctggagttggttcttctgaagaacagtttgacaggcgcagcaat
ttttatgcaaacaaggatgttagaccatcaggatctgtacgtttagatggtgcacttttg
ccaactcctgttagtaattctgataggattggtaggccgtcatccaacaaaagctggaag
aattctgaggaagaagagtacatgtgggatgatgtacgttctcaaggagcagattatgga
ggtaccagttcaacaagaaaaagagaatggatacctgatgatggaaatgttggaagcttt
caaagggttaaatgggcagaggcgggaggacctttggaccctgaccaacacaaattagat
agcttccaaagatttggaaatgcgacgggtcaagatagaagaattacaccatatatggat
catgaagagtaccttcatggtaagcacgaagtggaaccaagaattgatagggaaatgctc
ccggaaggacagccgttctcgtcatctcgtggttcctctctctggttatcccatgaaaaa
cctctcccagacattgtgtcagatcctaggatatcagcgttttccaatcagccagcggac
aggcctaccatttatgctggtaccttgtcaacaagtatcacttcatctgtacctgttggg
ttgtcagcagcctatgctggacgatcaagcctagaaagtgcagcaacaagatcaactgag
actataggacagcaaaagaatagatattggtcaacttcctcaccacctgtacagtcacct
tctgcatcatttgcacgccagagttcccctagtcctgtagagcttgattactcttccaaa
ccattctcacagttgggtcaaaattctctggaagactataaccaaagaactcatgccttg
gctcaaaaccttgcactttctcagggcagacctaatctgctgggtgctccttcacatgcc
tcccagcagattgaaaagcacccttccttgctgcagtcaaagccacatctcaggacactt
gatcaaccgcaggcaaacttttcacctgaaaattcatcttcagtatttaaatcttcaatc
cagctgcctatttctgttggcgtggggcatcggcagcctgaagaagtatctctgtctagt
gattccactcttatgagctcagatcatttaagtgctagcagtttgttggctggccttata
aagagtggattcaaaccgaatgaccccaacgatcttgccagtttgagggcacaacctcct
cttccaagtgggccacctcctcatgtttcgacatctttttcagctgcttcctcatccctg
caccttccagctagtgatactctgaagtctcaggcgccaaactctctgcgcccacctttg
ccccctgggttgccactttcgtcgccgtttgtgtgcccgacaacacagacctcggagaaa
gctgcaccactctctagtcttctcagttccctggttgcaaagggattgatttcttcgcct
tctgcagattcaactgtagcgatcccacaacagccctgtaaatcagaactgaacacacca
gatgacactgcttcagctccatctctgccttttgtccagccttcagttaaaaaggaaaca
tccaatcaaaactcatctgccccatctaaggtgctggtgcatcaacctgttgaaatcaag
aaggaacctgcagaaatcaagatggtagaccttattggctttgacttcaagcctgagatg
ctccgcaagtaccatgcacatgtgatcagcaccctctttgatgaccaaagtcatcaatgt
aatacatgtggtctaagattcagtcttgaagaagagctctctgtgcacactgcgtgccat
ggatcgaagcaaagtgagactagaaagactggtatcgcacctgaaaaatggtaccctagc
aaaaataattgggtcgatagatcacatgaagtgcagaacagcgccctggagtctgcttct
tctgttgcagatttgagctctgaagaggaagtttgtgaattcatggttcctgcagatgag
agtcagattatctgtgcactctgtggagagtcatttgatgacatttattccattgagaag
gataactggatgtacaaggatgcggtctattttgattcttcgaagacagaaggcagcagt
ggcgacagtgctgagagtaaagagcgtgtacccatagtgcatgcaagatgtatgtcgata
agctcaaatgatggcatggaggttgattag
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integrated database retrieval system
