Oryza sativa japonica (Japanese rice): 4347996
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Entry
4347996 CDS
T01015
Name
(RefSeq) probable helicase MAGATAMA 3 isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4347996
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
4347996
5.6.2.5 RNA 5'-3' helicase
4347996
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
4347996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
UvrD_C_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
4347996
NCBI-ProteinID:
XP_015614107
LinkDB
All DBs
Position
10:complement(join(1199586..1199975,1200072..1201847,1201923..1202049,1203453..1203621,1203725..1203820,1203933..1204121,1204559..1205897))
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AA seq
1361 aa
AA seq
DB search
MGSRGRMLFDLNELPTEAEEEEAAVVVSQPQKTLPVPTAGPSLFPQQEVTQSQGILNNNA
FKHAPSGSGFQPFVRSKDSQITKEPIKAEDNLNASIASTSMLINHSSDGVAKMIGSSNQV
SQAVEREEGEWSDADVASDTAGSSVSNKEELAGTATTQVKRDSQESEPTAVKSGNMIKDE
AAAEPSDTEMMDVPKDPVVRGPTGLESTKNLENKGNQLGDDSDLSNKSKDVRGVEANYAL
KFASNPSKRPKLDEHKEAMLGKKRARQTVFINVEDAKQAGTMKTSTPRRQSSFPAPIVTR
TVKEAFRSGGGIAERAAERQSQPTIRDQRQSEMLGSERSNSADPIDQISESNGDAETGSQ
GRPKKMNAEEAPADGYQQPMPRQLKGRQISSQRSVVTGQNTVDQKPVNKRSLVSKKQTPA
NNMQYQDTSVERLIREVTSDKFWHNPEEAELQCVPKSFESAEEYIRVFEPLLFEECRAQL
YSSYEESLESVSRDAHVMVRVKTVERRERGWYDVVVLPMHEYKWTFKEGEVAVLSFPRPG
SASQSSRSNRRNVGSNEDTESECGRLVGTVRRHTPIDTRDPIGAIIHFYLGDSFDSSSSE
TNVLRKLQPRSTWYLTSLGSLATTQREYVALHAFRRLNVQMQNAILQPSPEHFPKYEEQP
PAMPDCFTPNFADHLHRTFNGPQLSAIHWAAMHTAAGTSNGAVKKQEPWPFTLVQGPPGT
GKTHTVWGMLNVIHLVQYQHYYAALLKKLAPESYKQVSGNTSNSSETVAAGSIDEVLQSM
DQNLFRTLPKLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQS
RAAQAVSVERRTDQLLMKGRDEVIGWLQQLKCREQQLSQEIALLQRELTMVAAAGRSQGS
VGVDPDVLAQRDRSRDFLLQKLAASVESRDKVLVEMSRLLILESRFRVGSNFNMEDARAS
LEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVL
VGDPQQLPATVISKAAGTLMYSRSLFERFQLSGCPTILLSVQYRMHPQIREFPSRHFYQG
RLTDSESVVKLPDEAYYRDALMAPYIFYDISHGRESHRGGSSSYQNVHEAQFVLRLYENL
QKFLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIYINTVDAFQGQERDVII
MSCVRASNHGVGFVADIRRMNVALTRARRALWVVGNAGALMQSEDWALLIADAKARKCFM
DLDTIPKDFLAMKISNTPGRNTSNNIRNMRTGGPRPRHLEMLPDSRVSMRPDEDERSNSV
PRNGSYRNLDDLGRPGDRSRDNLPFGMPRRPNSSNGSRREV
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggggtctcgtggaaggatgttatttgaccttaatgagctcccaacagaagctgaagaa
gaagaagccgcagttgttgtgtcacaacctcagaagacccttcctgttcccacagcaggg
ccctctttatttccgcaacaggaagtaacacagtcgcaggggatattaaacaataatgcc
tttaagcacgcaccgtccggttcaggttttcagccttttgtgaggagcaaagattcacaa
attacaaaggagccaatcaaggcagaagataatttgaatgctagcatagcctctacatct
atgttaatcaaccatagctctgatggtgttgctaaaatgattgggtcctccaatcaggtt
tctcaggcagtggaaagagaggaaggagagtggtctgatgcagatgttgcttctgacact
gcagggagtagtgttagcaacaaagaagagttggctggtactgcaactacacaagtgaaa
agggattcccaagaaagtgaacctactgctgtcaaatctggtaacatgattaaagatgag
gccgccgctgagcccagtgacaccgaaatgatggatgtgcctaaggatccagtggtacgt
ggtcccacaggacttgagagcacgaaaaatttagaaaacaaaggaaatcagcttggggat
gattcagatctgtccaacaagtcaaaggatgttagaggtgtagaagccaattatgcgttg
aagtttgcaagtaacccttcaaagagacctaagttggatgaacacaaagaggcaatgcta
ggtaaaaagagagccaggcaaactgtgttcattaatgttgaggatgcaaagcaagctggc
acaatgaagacatcaacacccagaagacagtcatcctttccagcaccaattgtcacacgt
actgtgaaggaagcttttcgcagtggtggtggtattgctgaaagagctgcagaaagacaa
agtcagccaaccatcagggatcagaggcaatctgaaatgcttggttcggaacgaagtaat
tctgcagatccaatcgatcaaatttctgaatccaatggtgatgctgagacgggatctcaa
ggccggccaaagaaaatgaatgctgaagaagcccctgcagatggttatcaacaaccaatg
ccaagacagttaaagggcagacaaatttcttctcagagatcggttgtaacaggacagaat
actgtagatcagaaaccagtcaacaagaggtctcttgtttccaaaaaacaaactccagca
aataacatgcaataccaagacacttctgttgaacgacttatacgggaggtgacaagtgac
aagttctggcacaatccagaggaggcagaacttcaatgtgttcctaaaagttttgaatcc
gctgaggagtacattagagttttcgagcctttgctctttgaggaatgtcgagctcagtta
tatagttcctatgaggagagtcttgagtctgtatcaagggatgcacatgttatggtgcgg
gtgaaaacagtggagaggcgtgaaagaggatggtatgatgttgttgttctaccaatgcac
gagtataaatggactttcaaagaaggtgaagttgcagttttgtcctttcctaggcctggt
tcagcttcccaatcaagtagatctaataggcggaatgttggttcaaatgaagacactgag
tcagagtgtggacggcttgttggtacagtcagacgccatacgcctattgatacacgcgat
cccattggggcaatcattcacttctatcttggggattcatttgattctagcagcagtgag
accaatgttttgaggaaactccaacctcggagcacctggtatctgactagtcttggttcc
ctagcaacaacacaaagggaatatgttgccttgcatgcattccgcagactcaatgttcag
atgcaaaatgctattcttcagccaagtccagagcacttccccaagtatgaagagcagcca
cctgctatgcctgattgtttcactccaaattttgctgatcatctgcatcgtactttcaac
gggcctcagctatcagcgattcattgggctgcaatgcatacagctgctggcacaagcaac
ggagctgtgaagaaacaagaaccctggcctttcacattagtgcaagggccgcctgggaca
ggaaaaacccatacggtatgggggatgctaaatgttatccatcttgttcagtatcaacat
tactatgctgctctgctcaagaagcttgctcctgaaagttacaagcaagttagcggtaac
acaagcaacagctcggagactgttgctgcagggtccattgatgaagttttacagagtatg
gatcagaaccttttccgcactcttcccaagctttgccccaaaccacggatgcttgtatgt
gctccatcaaacgccgccacagatgagctgcttgctcgcgttcttgatcgtggttttata
gatggtgaaatgaaggtctatcgtcctgatgttgcccgtgttggagttgattcacaatct
cgtgctgctcaagctgtttcagttgagcgaaggactgaccagcttttaatgaagggccgt
gatgaagtgattgggtggctgcaacagctaaaatgccgtgagcagcaattatcacaggag
atagcccttctacaaagggaacttactatggttgcagcggctggcagatcgcagggttca
gttggagtagaccctgatgtgctcgctcaaagagatcgtagtcgtgattttctacttcag
aaacttgctgcttcagtagaaagcagggataaagtattggtggagatgtcacgcctgctg
atattagaaagcaggttccgtgttggcagcaacttcaatatggaagatgctagggctagt
ctagaagcaagtttcgccaatgaagcagaaattgtttttacaacagtttcaagcagtggt
cgcaagttattttcccgccttagtcatggctttgatatggtggtaattgatgaagctgct
caggctagtgaagtagcagtcctccctccactttcgctcggtgcagctaggtgtgtcttg
gttggtgatccacaacagctccctgcaactgttatcagcaaagcagctgggactttaatg
tacagcaggagtctctttgagaggttccagttgtctggttgccctaccattttgttatcg
gtgcagtatcggatgcatccccagatccgtgaatttccatcaagacacttctatcaaggg
cgccttacagatagtgaaagtgttgtcaaattgcctgacgaggcatattatagagatgca
ttaatggcaccttacatattctatgacatctcacatggtcgtgaatctcatagaggtggg
tcatcttcgtaccagaatgttcatgaagcacagtttgttttgcgtttgtatgagaatctt
cagaagttcttgagagctaatggtggcaagaaagcttctgttggtataatcacaccatat
aagttgcagttgaaatgtcttcagcgggaattcgaggaggttatgagtactgaggatggg
aaggacatttacataaacacagttgatgcttttcaaggacaggagcgtgatgtgattatt
atgtcatgtgtccgtgcctcaaatcatggtgtgggtttcgtggcagatatacgccgtatg
aatgttgctcttactagagctaggagagctctatgggttgttggtaatgccggtgctctt
atgcagtctgaggactgggctttactgatagcagatgcaaaggccaggaaatgttttatg
gatcttgataccattcccaaggacttccttgccatgaagatctctaacactccaggaagg
aacacttcaaataacataaggaacatgaggactggtggaccaagaccgaggcatttggaa
atgcttccagattccagggttagcatgaggcctgatgaggatgaacgttctaactctgtt
ccgagaaatggcagttacagaaatttggatgatctgggacgtcctggtgataggtctaga
gataatttgccttttggaatgcctaggaggccgaattcgtcgaatggttcaagaagagaa
gtgtaa
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integrated database retrieval system
