Oryza sativa japonica (Japanese rice): 4348225
Help
Entry
4348225 CDS
T01015
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4348225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4348225
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
4348225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
ELL
DZR_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
4348225
NCBI-ProteinID:
XP_015614802
UniProt:
Q7G4R3
Q8LMN8
LinkDB
All DBs
Position
10:complement(join(6192745..6192840,6194104..6194301,6194380..6194592,6194715..6194837,6195693..6195808,6196497..6196864,6197465..6197616,6198524..6198682,6199740..6199913))
Genome browser
AA seq
532 aa
AA seq
DB search
MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREY
NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI
LEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAE
EKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEEGNNS
DKGEEDEEEEAARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA
VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGKAAGLNESDADEDD
EDDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSGGGDDS
KASGGAASKKAKVESDTKPSVAKDETPSSSKPASKATAASKTSANVSPVTEDEIRTVLLA
VAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRDDKK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgccgacctggtgctgaaggcggcgtgcgagggctgcggctcgccgtcggac
ctctacggcacgtcgtgcaagcacaccacgctctgcagctcctgcggcaaatccatggcg
ctctccggcgcccgctgcctcgtctgctcggcccccatcaccaacctcatcagggaatat
aatgtacgggccaatgccaccacagataagagcttctctattggaagatttgtgactggt
ttaccccctttctcaaaaaagaagagtgcggaaaacaaatggtctcttcataaggagggg
ttacaaggtcgccagattcctgagaatatgcgggaaaaatacaataggaagccatggatt
ttggaagatgaaactgggcaatatcagtatcaaggtcaaatggagggatcacagtcatca
acagctacatactatttgttgatgatgcatggcaaggaatttcatgcatatcctgctggt
tcttggtataacttcagtaaaattgcacagtacaaacaacttaccctggaagaggctgaa
gagaagatgaataagagaaaaactagtgcaactggttatgaacgttggatgatgaaagca
gctacaaatgggccggctgcctttggttcagacgtaaagaaacttgagcctacaaatggc
actgaaaaagaaaatgcccgccccaagaaagggaaaaataatgaagagggtaacaattct
gataaaggcgaggaggatgaagaagaggaagctgcacgcaaaaataggcttgcgctcaac
aaaaaaagtatggatgacgatgaggaaggtggaaaggatctggacttcgatttggatgat
gaaattgaaaaaggtgatgactgggagcacgaagaaacattcactgacgacgatgaggct
gtggatatagacccagaggagcgggcagatttagctcctgagattcccgctcctcctgaa
attaagcaggatgatgaagagaatgaagaagagggtggtctgagcaagtctggcaaggag
ttgaaaaagcttcttgggaaagctgctggacttaatgagtcagatgccgatgaggatgac
gaagatgatgaccaggaggatgagtcatctccagtgcttgctccaaaacagaaggatcaa
cccaaagatgaacctgtagataacagccccgctaaaccaacaccatcaggacatgctcgt
ggcacacctcctgcatccaaatcgaagcaaaagaggaaatcaggtggtggtgatgattca
aaagcatctggcggtgcagcttccaaaaaagcaaaggtggaatctgatacaaaaccatca
gtggccaaagatgagacaccatcttcctcaaaacctgcatcgaaggccactgctgcatca
aaaactagtgcaaatgtatctcctgtcacagaggatgaaatcaggactgttcttcttgct
gttgctcctgtcactacacaagatttggtatctagatttaagtctagactacgaggtcca
gaggacaagaatgcttttgctgaaattctgaagaaaatatcgaagattcagaagactaat
ggccacaattatgtcgtccttagagatgacaagaagtga
DBGET
integrated database retrieval system
