KEGG   Oryza sativa japonica (Japanese rice): 4348610
Entry
4348610           CDS       T01015                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4348610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4348610
Enzymes [BR:osa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     4348610
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4348610
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     4348610
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2 IG_AIR9 PDE12-like_N
Other DBs
NCBI-GeneID: 4348610
NCBI-ProteinID: XP_015614670
UniProt: Q338D5 Q0IXR4
LinkDB
Position
10:complement(join(15017078..15017223,15017359..15017509,15017591..15017705,15017794..15017885,15017966..15018019,15018498..15018584,15018672..15018758,15018840..15018923,15019008..15019094,15019442..15020198,15021140..15021297))
AA seq 605 aa
MLSVVRVHLPSEIPIVGCEITPYVLLRLPTGVVSTDDVPEAAPADGYFMRYRWYRIQSDR
KVAICSVHPMEQATIQCLGCVKSKIPVAKSYHCSAKCFSDAWQHHRVLHERASSALNENG
AEEEELFGRFGSTGSGVLSTTGSGSMSNLGQSPGLNNGPVPLYPSGTDKNSGETWYEVGR
TRTYTPTADDIGHVLRFECVSVDAEKKVPVGPPTSIMTSRVIPAPTPTPRRLIQVNGDVL
SHLDLDSQTSFGTFSVLSYNILADAYATSDAYSYCPTWALSWTYRRQNLMREIIGYHADI
ICLQEVQLNHFEDFFSPELDKHGYQALYKKRTTEVYTGAPHAIDGCATFFRRDKFSHVKK
YEVEFNKAAQSLTDAIIPSTQRRVALSRLIKDNVALIAVLEAKFGNHGTDNPGKRQLLCV
ANTHVNVHQDLKDVKLWEVQTLLKGLEKIAVSADIPMLVCGDFNSVPGSSPHGLLAMGKV
DQLHPDLAIDPLGILRPASKLTHQLPLVSAYSSFARMVGVGYDLEHQRRRMDPATNEPLF
TNCTRDFTGTVDYIFYTADSLSVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCK
PRIRR
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgctgagcgtggtgcgggtgcacctgccctcggagatcccgatcgtgggctgcgagatc
acgccctacgtgctgctgcggctgcccaccggcgtcgtctccaccgacgatgtcccggag
gccgcccctgcggatggctacttcatgcggtacagatggtaccgtatacaaagtgatcga
aaagtcgcaatctgcagtgtacatccaatggaacaagcaacaattcagtgccttggttgc
gtcaagtcaaaaatacctgttgctaagagctaccattgttctgctaagtgcttctctgat
gcatggcagcaccatagggtcttgcatgagcgagctagtagtgcattaaacgaaaatgga
gctgaagaagaggagctatttggcagatttggtagcactggttctggggttcttagtact
actggttctggatcgatgtcaaatcttggacagagtcctggtttgaataatggccccgtg
cctttatatccttcaggcactgataagaactcgggtgaaacttggtatgaagtggggcgc
acacggacatatacaccaactgctgatgatattggacatgttctaagatttgaatgcgtg
tctgtggatgctgaaaaaaaggtacctgttggacctccaacttcaattatgacatcccgt
gtgattccagcaccaactccaactccacgtcgccttatccaagtgaatggagatgttttg
agtcacttagatttggacagccaaacatctttcgggacattctcagtgctgtcctacaat
attcttgctgatgcatatgctacaagtgacgcgtatagctactgcccaacatgggcactt
tcttggacatacagaagacagaacttgatgcgtgagattattggttatcatgctgatatc
atctgtcttcaggaggtgcaactgaaccacttcgaagattttttttcacccgagcttgat
aaacatggatatcaggcactttacaagaaaaggacaacagaggtatatactggagctcct
catgccatcgatggctgtgccacctttttccgtagagacaaattttcacacgttaaaaaa
tatgaggttgagttcaataaggctgcacaatcattgacagacgcaattattccctctacc
caaagaagagttgctttgagtcgattgattaaggataatgttgcactgattgcggtttta
gaagctaaattcggcaaccatggaactgacaatcctggcaaaaggcagcttctttgtgtg
gcaaatacacacgtaaatgtccatcaagacctcaaagatgtgaagctgtgggaggttcaa
actctcctaaaagggttggaaaaaatagctgttagtgcggacattccaatgttggtctgt
ggggatttcaattcagtccctgggagttctccacatggacttcttgctatgggcaaagtt
gatcaattgcatccagatctggccatagatccccttggaattttacgccctgcgagcaag
ttaacccatcagcttcctctggtgagtgcatattcttcatttgcaagaatggtcggtgtc
ggctatgatttggagcaccagcggaggaggatggaccctgcaacaaatgaaccacttttc
acaaactgcacacgagatttcactggaacggttgattacatattttacacagcggattca
ttgtcagtggagtcgttgttggaacttttggatgaggaaagtttaagaaaagacacggcc
cttccttctcctgaatggtcttcggatcatatagcactcttggcagaattccggtgcaag
cctagaatcagacggtga

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