Oryza sativa japonica (Japanese rice): 4348699
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Entry
4348699 CDS
T01015
Name
(RefSeq) TATA-binding protein 2-like
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4348699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4348699
03021 Transcription machinery [BR:
osa03021
]
4348699
Transcription factors [BR:
osa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
4348699
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
4348699
RNA polymerase III system
TFIIIB
4348699
RNA polymerase I system
SL1/TIF-1B
4348699
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
DUF4295
Motif
Other DBs
NCBI-GeneID:
4348699
NCBI-ProteinID:
XP_015612909
UniProt:
Q337X1
LinkDB
All DBs
Position
10:complement(join(16088587,16088679..16088857,16089014..16089106,16089190..16089234,16089387..16089509,16089646..16089733,16090532..16090674))
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AA seq
223 aa
AA seq
DB search
MAAAAVDPMALGLGTSGGGGGGESAVGGDGAEPVDLVEHPSGIVPTLQNIVSTVNLDCRL
DLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAKSEDHSKLAARKYA
RIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQP
KIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTEYRKTQQR
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgcggcggtggatccgatggcgctggggctggggacgagcggaggaggagga
ggaggcgagtcggcggtggggggtgatggggcggagccggtggatctcgtcgagcacccc
tccgggatcgtccccaccctccagaacattgtttcgacagtaaatctggactgcaggttg
gatctgaaaaaaatcgctctacaggctcgtaatgcagagtacaacccaaagcgttttgct
gcagttatcatgaggataagggacccaaagacaacagccctgatatttgcttcgggaaag
atggtttgcactggagcaaagagcgaagaccattcaaagcttgctgcgaggaagtatgcg
cgaatcgtccaaaagcttggcttcccagcaaagttcaaggatttcaagatccagaacatt
gttggttcatgtgatgtcaaatttcctattcgcctggagggccttgcttattctcatggc
gcattctctagttatgagccagagctcttccctgggctgatttaccggatgaagcagcca
aagattgtgcttctcatttttgtctctggcaagattgttctcactggagctaagtaccgc
aaagagatttacgctgcctttgagaacatgttcccggtgctcactgaatacaggaaaact
cagcagcgctga
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