Oryza sativa japonica (Japanese rice): 4348800
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Entry
4348800 CDS
T01015
Name
(RefSeq) probable pectate lyase 5 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00040
Pentose and glucuronate interconversions
osa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
4348800
Enzymes [BR:
osa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
4348800
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
4348800
NCBI-ProteinID:
XP_015614790
UniProt:
A0A0P0XVJ6
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Position
10:complement(join(17422203..17422422,17425105..17425310,17426081..17426993,17427070..17427557))
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AA seq
608 aa
AA seq
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MPIFPSMKHSPFSLLQRLKQTPSFNKQGSHLPQVIPFHLLSLSLSSPSEFSPSSPPLLSN
PKLQIKSQELHHPAADSLSKSTIFHSLTVLHTLLHCYKNPLHLQFSTPKSTQEPAAAMAG
PVESTRITLLLVAATLLLLPPPLAASLNSSLPDPAAVVADFHSKVATSRRRMQEAGGGGG
GGGGGCLTGNPIDDCWRCAGTDWRQDRQRLADCGIGFGRNAMGGKGGPVYVVTDPSDGDP
VNPAPGTLRYGAIQEGPLWIVFAGDMTIRLNEELLVNSYKTIDGRGANVHVGAGGACITL
QYVSNVIIHNIHVHDCVPAGNANVRASPTHYGWRTRSDGDGISLYSARDVWVDHCALSRC
ADGLIDAIMGSTAITVSNSYFSHHNEVMLLGHSDGYLPDSAMQVTIAFNHFGIQLVQRMP
RCRRGYFHIVNNDYTAWEMYAIGGSASPTINSQGNRYIAPADPNAKEVTKRVDTEEGQWA
GWNWRTEGDMMVNGAFFVPSGEGLEAIYDKASSTDPKSSALVDQLTAGAGVLGGPRDNGE
AAAYAGVNYAGVGTGGGGGGGAGAGGMGYGYLGMVYGSGGNWSCRADLTLQLTSLFLALF
ALICLHPL
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgccaatcttcccctccatgaaacattctccattctccctcctccaaaggctcaaacaa
accccctcttttaacaagcaaggaagccatctcccccaggtgattccatttcacctcctc
tctctctctctctcctcccccagcgagttctccccttcctccccaccattgctgtccaat
cccaagctccaaattaaatctcaagaacttcaccacccagctgctgattctctctccaaa
tccaccattttccactccctcactgtgctccacactctcctgcattgctataaaaatcca
ctgcatctccagttctccactcccaaatccacccaagaaccagccgccgccatggccggg
cccgtcgaatccacccgcattaccctcctcctcgtcgccgccaccctcctcctcctcccg
ccgccgctcgccgcctccctcaactcctccctccccgaccccgccgccgtcgtcgccgac
ttccacagcaaggtggcgacgtcgcggcggcggatgcaggaggccggcggcggcggcggc
ggtggcggcggggggtgtttgacggggaaccccatcgacgactgctggcggtgcgccggg
acggactggaggcaggaccggcagcggctggcggactgcggcatcgggttcgggcgcaac
gccatgggcggcaagggcgggccggtgtacgtcgtcaccgacccctccgacggcgacccg
gtgaaccccgcgccggggacgctccggtacggcgccatccaggagggccccctctggatc
gtgttcgccggcgacatgaccatccgcctcaacgaggagctcctcgtgaacagctacaag
accatcgacggccgcggcgccaacgtccacgtcggcgccggcggcgcgtgcatcacgctc
cagtacgtctccaacgtcatcatccacaacatccacgtccacgactgcgtccccgccggc
aacgccaacgtgcgcgcctcgccgacgcactacgggtggcgcacccgctccgacggcgac
ggcatctcgctctactcggcgcgcgacgtgtgggtggaccactgcgcgctgtcgcgctgc
gccgacggcctcatcgacgccatcatggggtccacggcgatcaccgtgtcgaacagctac
ttctcgcaccacaacgaggtgatgctgctggggcacagcgacgggtacctgccggactcg
gcgatgcaggtgaccatcgcgttcaaccacttcgggatccagctcgtgcagcggatgcct
cggtgcaggagggggtacttccacatcgtcaacaacgactacacggcgtgggagatgtac
gccattggagggagcgcgagccccaccatcaacagccagggcaaccgctacatcgccccc
gccgatcccaacgccaaggaggtgacgaagcgggtggacacggaggaggggcagtgggcg
gggtggaactggaggacggagggggacatgatggtcaacggcgccttcttcgtcccctcc
ggcgagggcctcgaggccatctacgacaaggcctccagcaccgaccccaagtcgtcggcg
ctcgtcgaccagctcaccgccggcgccggcgtcctcggcggccccagggacaacggcgag
gcggcggcgtacgccggcgtcaactacgccggagttggaaccggcggcggaggcggtggc
ggcgccggtgccggcgggatggggtatggttatctcgggatggtctatggcagcggcggc
aattggagctgccgagctgacctgacactgcaattgacttcattgtttcttgcactcttt
gctctcatatgcttgcacccattgtga
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