KEGG   Oryza sativa japonica (Japanese rice): 4348805
Entry
4348805           CDS       T01015                                 
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
  KO
K10779  transcriptional regulator ATRX
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:osa03000]
    4348805
   03036 Chromosome and associated proteins [BR:osa03036]
    4348805
Transcription factors [BR:osa03000]
 Eukaryotic type
  Zinc finger
   Cys4 GATA-factors
    4348805
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    4348805
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ADD_ATRX zf-4CXXC_R1 YlbD_coat
Other DBs
NCBI-GeneID: 4348805
NCBI-ProteinID: XP_015614507
LinkDB
Position
10:join(17454927..17455244,17455677..17455739,17455826..17455921,17456023..17456115,17456912..17457102,17457181..17457418,17458302..17458397,17458821..17458901,17459029..17459436,17459545..17459828,17459957..17460044,17460128..17460328,17460617..17460736,17461034..17461206,17462412..17462553,17462832..17462981,17463099..17463154,17463233..17463536,17463652..17463781,17463989..17464047,17464327..17464559,17465978..17466181,17466263..17466341,17466423..17466667,17466836..17467220)
AA seq 1478 aa
MDENRKLSDDMSKKMEPIHSNGEAGEDKTIIIEPESDANKLEVETDARHGICEAHKAHEY
GTMENDLHEEASTTDDDSENDSYEYLLRESDNEQTSESDAGEGDNEAPLTDEEVETLITE
FLDAESKAAQAQESLEKESLEKIESEVRLELSESLQGNELESAVSTEMKQYKKEWESELD
DLETHIAVLLEQLDAAGVELPSLYKSIESQVPNVCETEAWKNRAHWAGYQVPEEANKSIR
KADEYLQSCRPVRRKHGRLLEEGASGFLAGKIPVGDDGSAQCHEKSWNAFNELTKSKEYA
ESSFGSSNWASVYLASTPQEAAALGLQFPGVDEVEEIAEVEGAVSDIKGVDEIELSEVQR
RKYRKVPEEDDAKMTKRLQRHLKERRTRHLHKENIGLASSSNGCCELPPKKLKTYENGVS
VELAKRTREDDVEFDNKRSKTVIIESDDDMQTDSKPDSAPSENADEIIDLDIFPSQSPKL
GDKVRPKPFKCTICTEMLNVPEVHRHPVLDVIICGSCRFLVIEKNRLEDPVSGGYCTWCV
KSEQLQSCSSCKLLFCRNCLSKNFGEEGLSEARVAGWQCCCCLPSQLEHLISDCDKALGG
VESSDPENDFAELSVLESNGPFSKHKMKKRIRRIMDDEELGEETKLKIAMEKARQEHLKS
MQEQSASKLKSNNIGISLEAPSEVSEYVGDGHIVNLAREEDEAPVRIPSSISAKLKPHQV
SGIRFMWENVIQSVKKVKSGDKGFGCILAHNMGLGKTFQVITFLYTVMRCIQLGLRTALI
VTPVNVLHNWKKEFIKWCPAELKPLRVYMLEDVPRCRANIQYLLKKWRIKGGVLLIGYSS
FRNLSLGRSARDKTVANEITNALQCGPDILVCDEAHIIKNRRADTTQALKQVRTQRRIAL
TGSPLQNNLMEYYCMVDFVREGYLGSSHEFRNRFQNPIENGQHTNSTSDDVKIMNQRSHI
LYEQLKGFVQRMDMNVVKNDLPEKKVFVVTVKLSQLQRKLYRRFLDVNGFSSSAASEKSF
QRSGFFAKYQTLALIWNHPGLLQMAKQKGNLRQEDVESFLMDESSSDDNIENYLPNGEKL
RSRNDQLSKKSSDVVNEESNWWENLLDENAYKEADYSGKMVLLLDILSSCSELGDKALVF
SQSLSTLDLVEFYLSKLQVNGKEGKYWKQGKDWYRIDGSTPSSERQNLVERFNDPENIRV
KCTLISTRAGSLGINLHSANRVILLDGSWNPTHDLQAIYRVWRYGQTKPVYAYRLMAHAT
MEEKIYKRQVTKEGLAARVVDRQQVSRTISKEEMLHLFEFGDEELLEQSGSTMNGHSKVG
TEKPPTPNSSETTEHLPLDRLMVNLLHDHSRWIASYHEHETLLQENEEERLTKEEQDMAW
LSYNKLLEVAPRKATHDAERKPSTVPTESSLIQPPKATSRSRQPQQPKITSNNQKKCNNL
SHLLTLRSQGTKPGCSTSCKECGQDISWETLNRDGRSR
NT seq 4437 nt   +upstreamnt  +downstreamnt
atggatgagaatagaaaattatctgatgacatgtccaagaaaatggaacctattcactct
aatggagaggcaggggaagataaaactataattattgaacctgaaagtgatgcaaataaa
cttgaagtggaaactgacgcaagacatggtatctgtgaggcgcacaaggcgcatgaatat
ggaacaatggaaaatgatttgcatgaggaagcatccaccaccgatgatgattcagagaat
gactcatatgaataccttcttcgggaatcggataatgagcaaacttcagagtctgatgct
ggtgagggagacaatgaggcacctctcactgatgaagaagttgaaacattaattaccgaa
ttccttgacgctgagagcaaggctgctcaagcgcaagaatcacttgaaaaggagtcactg
gaaaagattgaatctgaagtaaggttggagctatcggagagtctccaaggaaatgagtta
gagtcagccgtttctactgagatgaagcaatacaagaaggaatgggaatctgaacttgat
gatttggagactcacattgctgttctcttggagcaacttgatgctgctggtgtcgaactt
cccagcctctacaagtctatagaaagccaagttccaaatgtttgtgaaactgaagcatgg
aagaacagggctcactgggctggttatcaagtgcctgaggaagctaataaatcaatcaga
aaagctgatgaatacctccaatcttgtagacctgtaaggagaaaacatgggaggttgctg
gaggaaggtgctagtggctttcttgctggaaagattcctgttggggatgatggatctgca
caatgccatgagaaaagttggaatgcattcaatgaacttaccaaatctaaggaatatgct
gaaagttctttcggaagtagtaactgggcatcagtttatctggccagtaccccacaagaa
gcggctgctttaggtctccaatttccaggagttgatgaggtagaggagatagctgaagtt
gagggtgctgttagtgacataaaaggtgtcgatgaaatagagctttctgaagtacagaga
agaaaatacagaaaggtaccagaagaggatgatgcaaagatgacaaaacgtctgcagcgc
catttgaaagaaagaaggacaagacatttgcataaggagaacattggtttggcgtcatca
tcaaatggatgctgtgagctgcctcccaaaaaactcaaaacatatgaaaatggagtttct
gttgagctagcgaagcgcacacgtgaagatgatgttgagtttgacaataagaggtcaaaa
actgtaattattgaaagtgatgatgacatgcagactgatagcaagccagattcagcacca
agtgaaaatgcggatgagattattgatcttgatatcttcccatcacaaagccctaaactt
ggtgataaagttcggcctaaacctttcaagtgcactatttgcactgaaatgttgaatgtc
cctgaagtgcaccgccacccagtattggatgttataatttgtggatcttgcagatttcta
gtgatagagaagaatcgtctcgaggatcctgtgtctggtggttattgcacctggtgtgta
aaaagtgaacagcttcaaagttgcagctcttgtaaactgcttttctgcagaaattgcttg
tcaaagaattttggtgaagaaggcttatcggaagctagagtagctggttggcaatgttgc
tgctgcctacccagtcaactggaacatttaatttctgactgtgacaaggccctaggtggt
gttgagtcttctgatcctgagaatgactttgcagagctttctgtattagagagcaatggt
ccttttagcaagcataaaatgaaaaagaggataagaagaatcatggatgacgaagaactt
ggagaggaaacaaagcttaaaattgcaatggagaaggctaggcaagaacatctgaagtcc
atgcaagagcagtctgccagcaagttaaagagcaacaatatcggaatttccttggaagca
ccatctgaggtttctgaatatgttggggatggacatatagtaaaccttgcccgcgaggaa
gatgaagcacctgttagaattccaagcagcatatctgctaaactgaaacctcatcaggta
tcaggaataagatttatgtgggaaaatgtgatccaatctgtcaagaaggtcaaatctggg
gataaaggttttggttgcattttggctcacaacatgggccttgggaaaacttttcaggtt
attacattcctgtatactgttatgagatgcatccagttgggactgcgcacggcgcttata
gttacccccgttaatgttttgcataactggaagaaagagttcatcaaatggtgtccagca
gaacttaagccacttcgtgtgtatatgttggaggatgttccaaggtgcagggcaaacatt
cagtatttactaaaaaagtggcgaataaaaggtggcgtgcttctgattggttattcatca
tttagaaacctttcccttggaaggagtgcgagggacaaaactgttgcaaacgagatcacc
aatgctttgcagtgtgggccagatattcttgtatgtgatgaagcacatataattaagaac
aggagagctgacactacacaagctttgaaacaagtaaggacacagagaagaattgcgtta
actggatctccattgcagaataatttgatggaatattactgtatggttgattttgttagg
gaaggttatcttggaagtagccatgagttccgtaacaggttccagaaccccattgaaaat
gggcagcacacgaattctacatcagatgatgtcaagatcatgaaccaacggtcacatatt
ctgtatgaacaactgaagggatttgtccagcgaatggacatgaacgtggtgaagaatgat
ctaccagaaaagaaggtttttgttgttactgttaaactctctcaactacaaaggaagctg
tacagaagattcttggacgtgaatggtttctcaagcagtgctgcttcagaaaaatctttt
cagcggagtggcttctttgccaagtaccaaacgttagcgctgatatggaaccatcctggt
cttctccagatggctaaacagaaaggaaatttgcgccaagaagatgtcgagtcctttctg
atggatgagagctctagtgatgataatattgaaaattacttgccaaatggagagaagctg
agaagcagaaatgatcagctatccaagaaaagttctgatgttgtaaatgaggaaagtaac
tggtgggagaatcttttagatgaaaatgcttataaggaagcagattatagtggcaaaatg
gttttactccttgatatcctgtcatcatgttctgaattgggtgacaaggcattagtgttc
agccagagcttgagcactctggatttggtggaattttatctatctaagttgcaagttaat
ggaaaagagggcaaatattggaaacaaggcaaggattggtacaggattgatgggagcact
ccatcttctgagcgacaaaatcttgtggagaggtttaatgaccctgaaaacattagagtg
aaatgcacattgatatctactcgtgctggatctctaggcattaaccttcattcagcaaac
cgtgtgattcttcttgatggttcatggaatccaacccatgatttgcaagccatctatcgg
gtttggaggtatggccagaccaagcctgtgtatgcttaccgcctaatggctcatgcaaca
atggaagagaaaatatataaacggcaggtgacaaaagaagggcttgcagcaagggtggtg
gatagacagcaagtgtctagaacaatctctaaagaagagatgttgcatcttttcgagttt
ggtgatgaggaactactggagcagagcggttctaccatgaatggtcacagtaaagttggg
actgagaagccacctactcccaactccagtgaaaccactgaacatttacctttggacagg
ctcatggtgaacctacttcatgaccactcccggtggatcgcaagttaccatgaacatgaa
acccttctgcaagaaaatgaagaagaaaggcttaccaaggaggagcaagatatggcatgg
ttaagctacaacaagttgctagaagttgccccgaggaaagctacacatgacgccgagaga
aaaccaagtactgttccaacagagagcagccttatacaaccacctaaagctacttcaaga
agccggcaaccccagcagcctaagatcacttcaaacaaccaaaagaagtgtaacaacctg
agccacttgcttactctgagaagccaaggcaccaagcctggatgcagcacgagttgcaaa
gaatgtggccaggatattagttgggagacgctaaacagagacggtagatcaaggtga

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