Oryza sativa japonica (Japanese rice) (RefSeq): 4348844
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Entry
4348844 CDS
T01015
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
osa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4348844
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
4348844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4348844
04121 Ubiquitin system [BR:
osa04121
]
4348844
03400 DNA repair and recombination proteins [BR:
osa03400
]
4348844
Enzymes [BR:
osa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
4348844
Spliceosome [BR:
osa03041
]
Complex B
Other components
Prp19 complex
4348844
Complex C
Prp19-CDC5 complex
4348844
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
U-box type E3
4348844
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
4348844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Prp19
WD40
ANAPC4_WD40
NBCH_WD40
WD40_like
U-box
zf-Nse
V_ATPase_I_N
PAS_11
Motif
Other DBs
NCBI-GeneID:
4348844
NCBI-ProteinID:
XP_015614850
UniProt:
Q9AV81
LinkDB
All DBs
Position
10:complement(17203586..17210654)
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AA seq
527 aa
AA seq
DB search
MICAISGEVPDEPVVSKKSGLLFERRLVERYIEDHGKCPVTKEELTMDDIVAVKTNKVVK
PRQLQAASIPGLLGMFQNEWDAIMLSSFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARALLAQAERQIPASMAGAAPTAVVSNGKRAFEDEVGPDGKKIRPGINPVMIDELT
ECNTMLSAHRKKRQVPPTLASIDAIERYTQISSHPLHKTNKPGILSMDIHPSKDIIATGG
IDTNAVLFDRPSGQILCTLTGHSKKITSLKFVPRDELFVTGSADKTVKIWQGSEEGNYNC
IHTLKDHTAEVEAVTVHATQKYFVTASKDNTWCFYDIPSGSCLTQVGESSGQEGYTSASF
HPDGLILGTGTTEAVVKIWDVKTQSNVAKFEGHVGPVTAMSFSENGYFLATAALDGVKLW
DLRKLRNFRTISPYDSDTPTNSVEFDFSGSYLAVGGSDTRVYQVANVKLEWNLVKTLPDL
SGTGKVTNVKFGTDAKYIAVGSMDRNLRIFGHPGEDDQMDDAKPSEE
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgatctgcgcaatctccggcgaggtgccggatgagccggtggtgtcgaagaagtccggg
cttctcttcgagcggcggctcgtcgagcgctacatcgaggaccatgggaagtgcccagtc
accaaggaggagctcaccatggacgacatcgtggcggtgaagaccaacaaggttgtgaag
cccagacaattgcaggctgcaagcattcccggactcctggggatgttccaaaatgagtgg
gatgctatcatgctttctagttttgctttggagcagcagcttcatacagcaagacaagaa
cttagtcatgcgctatatcagcatgatgctgcctgccgtgttatagctagattaaagaaa
gaacgagatgaagccagagcacttttggctcaagctgagagacagattcctgcatcgatg
gcaggagctgcacctacagctgttgtctccaacgggaaaagagcatttgaagatgaagtt
ggaccagacgggaagaagattcgtcctggtatcaaccctgtgatgattgatgaactaaca
gagtgtaataccatgctctctgcgcatcgtaagaaacgacaggttcctccaactttggca
tcaattgatgcaattgagagatatacccagatctccagtcatccacttcacaagacaaac
aaaccaggcatcttatctatggatattcatccttcaaaggacattattgcaactggtggc
attgatacaaacgcagtgctttttgacaggccatccggtcaaatcttgtgcacacttact
ggtcactcaaagaagataaccagtttgaaatttgttcctcgggatgagctctttgtaact
ggatcagcagataagactgttaaaatttggcaaggaagcgaggagggaaattacaattgc
atccatacattgaaagatcacactgccgaggttgaagctgttacagtccatgcgactcag
aagtactttgtgactgcttccaaggataatacttggtgcttctacgatattccatcagga
tcttgcctcacacaggttggcgagtcttcaggacaagagggatatacatctgcatctttc
cacccagatggtcttatcctggggacagggaccactgaagctgttgtcaaaatttgggat
gtgaagacgcagtcaaatgttgcaaagtttgaggggcatgttggaccagtgactgctatg
tccttctctgaaaatggttacttccttgcgactgctgctctcgatggagtcaagctttgg
gatcttcgaaaattaagaaactttaggacgatatcaccttatgactcagacacgccaaca
aattctgtggaatttgactttagcggaagttatctagctgttggtggttcagatacaagg
gtttaccaagtagcaaatgttaagcttgaatggaatcttgtcaagaccttaccagatttg
tcaggcacagggaaagtgacaaacgtcaagtttggcaccgatgcgaagtacattgccgta
ggttctatggatcgtaacctacggatatttgggcatccgggagaagatgatcaaatggac
gacgcaaagccatcggaagagtga
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