KEGG   Oryza sativa japonica (Japanese rice): 4348844
Entry
4348844           CDS       T01015                                 
Symbol
OsJ_31829, OsPUB72, PRP19, PUB72
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03040  Spliceosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4348844 (OsJ_31829)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4348844 (OsJ_31829)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4348844 (OsJ_31829)
   04121 Ubiquitin system [BR:osa04121]
    4348844 (OsJ_31829)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4348844 (OsJ_31829)
Enzymes [BR:osa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     4348844 (OsJ_31829)
Spliceosome [BR:osa03041]
 Complex B
  Other components
   Prp19 complex
    4348844 (OsJ_31829)
 Complex C
   Prp19-CDC5 complex
    4348844 (OsJ_31829)
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  U-box type E3
   4348844 (OsJ_31829)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    4348844 (OsJ_31829)
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 NBCH_WD40 WD40_like U-box zf-Nse PAN2_N PAS_11 V_ATPase_I_N
Other DBs
NCBI-GeneID: 4348844
NCBI-ProteinID: NP_001409987
LinkDB
Position
10:complement(join(17870023..17870156,17870253..17870323,17870415..17870466,17870701..17870797,17870876..17870953,17871050..17871166,17871284..17871388,17872138..17872212,17872409..17872468,17872566..17872661,17872950..17873066,17873254..17873372,17873461..17873602,17875316..17875402,17875964..17876026,17876193..17876264,17876375..17876460,17876544..17876556))
AA seq 527 aa
MICAISGEVPDEPVVSKKSGLLFERRLVERYIEDHGKCPVTKEELTMDDIVAVKTNKVVK
PRQLQAASIPGLLGMFQNEWDAIMLSSFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARALLAQAERQIPASMAGAAPTAVVSNGKRAFEDEVGPDGKKIRPGINPVMIDELT
ECNTMLSAHRKKRQVPPTLASIDAIERYTQISSHPLHKTNKPGILSMDIHPSKDIIATGG
IDTNAVLFDRPSGQILCTLTGHSKKITSLKFVPRDELFVTGSADKTVKIWQGSEEGNYNC
IHTLKDHTAEVEAVTVHATQKYFVTASKDNTWCFYDIPSGSCLTQVGESSGQEGYTSASF
HPDGLILGTGTTEAVVKIWDVKTQSNVAKFEGHVGPVTAMSFSENGYFLATAALDGVKLW
DLRKLRNFRTISPYDSDTPTNSVEFDFSGSYLAVGGSDTRVYQVANVKLEWNLVKTLPDL
SGTGKVTNVKFGTDAKYIAVGSMDRNLRIFGHPGEDDQMDDAKPSEE
NT seq 1584 nt   +upstreamnt  +downstreamnt
atgatctgcgcaatctccggcgaggtgccggatgagccggtggtgtcgaagaagtccggg
cttctcttcgagcggcggctcgtcgagcgctacatcgaggaccatgggaagtgcccagtc
accaaggaggagctcaccatggacgacatcgtggcggtgaagaccaacaaggttgtgaag
cccagacaattgcaggctgcaagcattcccggactcctggggatgttccaaaatgagtgg
gatgctatcatgctttctagttttgctttggagcagcagcttcatacagcaagacaagaa
cttagtcatgcgctatatcagcatgatgctgcctgccgtgttatagctagattaaagaaa
gaacgagatgaagccagagcacttttggctcaagctgagagacagattcctgcatcgatg
gcaggagctgcacctacagctgttgtctccaacgggaaaagagcatttgaagatgaagtt
ggaccagacgggaagaagattcgtcctggtatcaaccctgtgatgattgatgaactaaca
gagtgtaataccatgctctctgcgcatcgtaagaaacgacaggttcctccaactttggca
tcaattgatgcaattgagagatatacccagatctccagtcatccacttcacaagacaaac
aaaccaggcatcttatctatggatattcatccttcaaaggacattattgcaactggtggc
attgatacaaacgcagtgctttttgacaggccatccggtcaaatcttgtgcacacttact
ggtcactcaaagaagataaccagtttgaaatttgttcctcgggatgagctctttgtaact
ggatcagcagataagactgttaaaatttggcaaggaagcgaggagggaaattacaattgc
atccatacattgaaagatcacactgccgaggttgaagctgttacagtccatgcgactcag
aagtactttgtgactgcttccaaggataatacttggtgcttctacgatattccatcagga
tcttgcctcacacaggttggcgagtcttcaggacaagagggatatacatctgcatctttc
cacccagatggtcttatcctggggacagggaccactgaagctgttgtcaaaatttgggat
gtgaagacgcagtcaaatgttgcaaagtttgaggggcatgttggaccagtgactgctatg
tccttctctgaaaatggttacttccttgcgactgctgctctcgatggagtcaagctttgg
gatcttcgaaaattaagaaactttaggacgatatcaccttatgactcagacacgccaaca
aattctgtggaatttgactttagcggaagttatctagctgttggtggttcagatacaagg
gtttaccaagtagcaaatgttaagcttgaatggaatcttgtcaagaccttaccagatttg
tcaggcacagggaaagtgacaaacgtcaagtttggcaccgatgcgaagtacattgccgta
ggttctatggatcgtaacctacggatatttgggcatccgggagaagatgatcaaatggac
gacgcaaagccatcggaagagtga

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