Oryza sativa japonica (Japanese rice) (RefSeq): 4348939
Help
Entry
4348939 CDS
T01015
Name
(RefSeq) pre-mRNA-processing protein 40C isoform X1
KO
K12824
transcription elongation regulator 1
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4348939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4348939
Spliceosome [BR:
osa03041
]
Complex A
U1 snRNP components
U1 related factors
4348939
Complex B
4348939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
4348939
NCBI-ProteinID:
XP_015614639
UniProt:
Q337J6
Q0IWV8
LinkDB
All DBs
Position
10:complement(18321126..18331776)
Genome browser
AA seq
1078 aa
AA seq
DB search
MATPATAASDATNPEAAEVPSAAPASESEGPFDSGVVAAATTPAVVDSAVEGDAPAAPAP
TSGSGPAAPSMPANPASPATPGPPRPQFAGSPAYASPPAPAFSYNVLPRPSPRPQVGSGA
AQQQLASPPAMMAPSVAAAALQPPVPGQYFGNRPSFSYNVVSHANAGLPTGQQFQLDTGT
NHAVQVSRFVPPSSLQPPAPMNLARPSSAFPGAGAMPPNPPGSIRLPFPGPPRPSINTFV
ASPQQAQPQASQLPSNSGSSDVSTSRSDTRSVPEASPQTMQLSTGPPSTSTAGSPSITVQ
MPTNPSLPTRPEVFGAIGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPTAFQQP
GQQQLYPSYPSAHGVQPQPLWGYPPQPTGFQQPPFQSYPSGLLGPLGRPMVGSSSVTAYL
PSIQPPGVSTTDRDSKELSSANPGSEQPTQQGSQNSDQLEDKRTTAIQDSDSWSAHKTEA
GVVYYYNALTGESTYQKPPGYKGEPEKVAAQPVPVSWDKLAGTDWSIVTTSDGKKYYYDN
KLKVSSWQLPPEVAELIKNAESGPLKGSSTSLQDAGTIGNKEEISIDIDTPAVQTGGRDS
LPLRQTVAPASSSALDLIKKKLQDAGASSVPSPLATPSSASELNGSKTTDAAPMGHQVSI
SGEKSKDNSGDGNMSDSSSNSDDEEHGPSEEECTRQFKEMLKERGVLPFSKWEKELPKIV
FDPRFKAIPSHSRRRSTFEQYVRTRADEERKEKRAAQRAAVEAYKQLLEEASEDINSNKD
YKEFKRKWGTDPRFEALDRKERDALFNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITS
TSRWTKVKENFRSDARYKAMKHEEREVAFNEYIAELKSAEKEAEQAAKAKLDEQAKLKER
EREMRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPRLEKDPQGR
AVNPDLGKGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEIAARTTDEGKTAINSWTEA
KGLLRSDPRYNKLASKDRESIWRRYADDMKTKLKQSDMKERSDTDGKQRRSSDPPRRR
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggcgacggccgcctccgacgcgaccaacccggaggcggcggaagtgccg
tccgctgccccggcgtcggaatcggaaggaccgttcgattccggcgtcgtcgcggcggca
acgacaccggcggtggtggatagtgcggtggagggagacgccccggccgctcccgctcct
acctccggctccggtcctgcggcgccgtctatgccggcgaatccggcgtctcctgcaact
ccagggcccccgcggccgcagttcgccgggtcgcccgcttacgcgagccccccggcgccg
gcgttctcgtacaacgttcttccgaggccgtcaccccggccgcaggtgggcagtggtgcg
gcccagcagcagctagcttcccctccggccatgatggctccttcagtggctgctgcagct
cttcagcctcctgtcccagggcaatattttgggaacaggccgtctttttcatataatgta
gtctcgcatgctaatgctggcttgcctactggtcagcagtttcaacttgacaccggcaca
aaccatgctgtccaagtttcacggtttgttccaccatcatccttgcaacctccagctcct
atgaatttagctcgcccaagttcagcatttccaggagcaggagctatgccaccaaatcct
cctggatctattcgcttgccatttccaggtccacccagaccatccatcaatacttttgtt
gcaagcccacaacaggcacagccccaggcatctcagttaccttcaaacagtgggagctca
gatgttagcacttccaggtctgatactcgaagtgtcccagaggctagtccccagaccatg
cagttgtcgacaggcccaccatcaacaagtactgctggaagtccttcaatcactgttcag
atgccaacaaatccatcacttccaactcgcccggaggtttttggggccattggtgcttct
gtacctggacaaccttccacaatcttgtctgctccaccaagcctccttgggagacctatg
actccatctgcttctccttttccccaaacatcgcagtctccaactgcttttcaacagcct
ggtcagcaacagttgtacccctcctatccttcagcacatggggttcaacctcagcctcta
tggggatatcccccacagcctactggttttcagcaaccccccttccaatcatacccatct
ggtcttctagggcctcttggtaggccgatggttgggagttcttctgtgactgcatacttg
ccaagcatacaaccacccggtgtctcaacaactgacagggattccaaggagctatcatca
gcaaatcctggatctgagcagcccactcaacagggaagccaaaacagcgatcagctcgag
gacaaaagaactactgccattcaggattcagattcatggtctgcacacaagacagaggct
ggtgttgtatattattacaatgccttgactggagaatcaacttatcaaaaaccacctggt
tataaaggggagcctgagaaggtcgcagcccagccagttccagtttcttgggacaaactg
gctggcactgactggagcatagtaacgacaagtgatggaaagaaatattactatgataat
aagctaaaggttagcagctggcagcttccaccagaggtggctgagctcatcaagaatgcc
gagtctggtccattgaaaggaagttcaacttcgctgcaagatgctggcacgatagggaat
aaagaggaaataagtattgatattgatactcctgctgtacagacaggtggccgtgattcg
ttgccacttcgacaaacagttgcccctgcatcgtcttctgctttggatttaataaagaag
aaattgcaggatgctggcgcttccagtgtgccttcacctcttgctactccatctagtgca
tccgagctgaatgggtctaaaacaactgatgctgcacctatgggacatcaagtctcaatt
agcggcgagaaatcaaaagataacagtggtgatggtaatatgtcagattcctcttcaaat
tcagatgatgaggaacatggcccaagtgaagaggagtgtactcgtcagtttaaggagatg
ttaaaggaaagaggtgtattgccattttcaaagtgggaaaaggaactcccaaaaatagtg
tttgatccacgttttaaggctattccaagtcactcgaggagacggtctacatttgagcag
tatgttcggacacgtgctgacgaggagcggaaagagaaaagagctgctcagagagctgca
gtggaggcgtataaacagttactagaagaagcatccgaggacatcaactccaataaggat
tacaaggaattcaaaagaaaatggggcactgatccaaggtttgaagccttggaccgaaaa
gaaagggatgctcttttcaacgagaaggtgaaatcgattgaagagaaagttcaatcagtg
cgcaatgctgtgatagctgagttcaaatcaatgcttcgagaaagtaaagacataacctct
actagccgttggaccaaagtgaaagaaaatttccggagcgatgcaaggtacaaagccatg
aagcacgaagaaagagaggttgcttttaatgagtacatagcagaactaaaatccgctgaa
aaggaagcagagcaagctgccaaggccaaactggatgaacaagccaagttaaaggagagg
gagcgcgagatgcggaaaaggaaagaaagggaagaacaggaaatggagagagtaaaattg
aagatccgaagaaaagaggccgtgtcttcatatcaagctttacttgttgaaatcataaaa
gatcccaaggcatcatggacagaatccaaaccaagacttgaaaaggatccacaaggccgt
gcagtaaatcctgatttaggtaaaggtgatgcagaaaagttatttcgtgaccatgtcaag
gacctgtatgagcgatgtgttcgggatttccgtgcgctcctatctgaggtgataactcca
gagatagctgctcgaacaacagatgaaggaaagactgcaattaactcctggaccgaagca
aaaggtcttctaagatctgatcctaggtacaacaaactggcaagtaaagaccgggagtct
atttggcggcgctatgcggacgacatgaagacaaaacttaaacagtcagatatgaaggag
agatcagatacagatggaaagcagcgtaggtcctctgatccgccaaggcggagatag
DBGET
integrated database retrieval system
