KEGG   Oryza sativa japonica (Japanese rice): 4348944
Entry
4348944           CDS       T01015                                 
Name
(RefSeq) endoribonuclease Dicer homolog 3b
  KO
K11592  endoribonuclease Dicer [EC:3.1.26.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:osa03036]
    4348944
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    4348944
   microRNA pathway
    RISC loading complex
     4348944
SSDB
Motif
Pfam: Ribonuclease_3 Dicer_dimer Ribonucleas_3_3 DEAD Helicase_C ResIII PAZ dsrm SWI2_SNF2 DND1_DSRM Dicer_dsRBD AAA_22
Other DBs
NCBI-GeneID: 4348944
NCBI-ProteinID: XP_015612986
LinkDB
Position
10:join(19028711..19029006,19029119..19029302,19029400..19029513,19030004..19030138,19030304..19030373,19031118..19031182,19031277..19031408,19031537..19031689,19032192..19032327,19032956..19033061,19033156..19033348,19033421..19033581,19033845..19034060,19034350..19034615,19035123..19035397,19035489..19035997,19036090..19036187,19037591..19037799,19037878..19038087,19038515..19038991,19039080..19039361,19039528..19039854,19040036..19040125,19040207..19040282,19040406..19040517,19040622..19040820)
AA seq 1696 aa
MTGPHVGLSPHISATAAAALHRANQLSSASSHRRLTHFAFSHSPPPRRRFIPTSSCASPP
PNPPNAAAAAMADDEAAVLPPPPPLPPPCRPHRQLRPRGYQVEVFEAALRGNTIAVLDTG
SGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTVHLVHQQFEVIREYTDLDVMMCSGAS
RVGEWGADHWKEEVGRNEIVVMTPQILLDALRHAFLTMSAVSLLIFDECHRACGSHPYAR
IMKEFYFGSQWRPDVFGMTASPVATKGASTLHNCEAHISQLELTLDAKIYIVEDRNELES
FSPPTTIVNKYYDAYMVDFDNLKSKLQIFSDEFDSLLVGLQESPSNKFKDTDNILETSRK
SLSRYHGKILYSLNDLGPIITSEVVKIHIESVKPLCDSEDCIFSKASLCLHMSYFKEALS
LIEEILPQGYGELMKSESGSEELTKRGYISSKVNTLINIFKSFGSSNEVLCLIFVDRIIT
AKAVERFMRGIVNFSCFSISYLTGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEE
GVDVPNCSCVIRFDLPRTVCSYVQSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYY
VKNCALYRHPNALSYDLSIQGMYTYQVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKP
SFEVTIEDGLFKCTLTLPRNAAFQSIVGPLSSSSNLSKQLVSLEACKKLHQLGELNDHLV
PLTEEPMDTDFTTADEKCISGPGTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFL
CDQEGENYAGFVLLMEPELDDDVAPSKMDLFLIPNKMVYTTVTPRGKVQLNKKQLGKGKL
FQEFFFNGIFGRLFHGSRKSGAQRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQDDLSIH
WEAIESCAGAVEQLWSSYQGDENVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVL
SLHTGRIYTVLDLILDTTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLK
QSHNAHNLLFSKLKYLDGSTGKPLLMEKEQIHARVPPELLIHLDVTTDILKSFYLLPSVI
HRLQSLMLASQLRREIGYNQHIPVTLILEAITTLRCCETFSLERLELLGDSVLKYVVGCD
LFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPF
PCNCGIETAFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIA
AALWVMRWFGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAI
THPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQ
AVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAG
AVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEV
IIEMSLQLRDELLVAQGHDRNKKRAKAKAASRILADLKQQQGLSIKQCLSKAKQLDIVTS
DLQFDLTSSGTQLSYSDLNDYHILEGLSSVKKEVVLPLKMEKGGPRSALFKLCKILQWPM
PEFEFVEQRFRTPIVMDGATTTNFNSFVSTITLHIPDATTITFQGERRTDKKSAQDSASL
MMLHKLQELKICICKT
NT seq 5091 nt   +upstreamnt  +downstreamnt
atgacgggcccacatgtcggcctctcgcctcacatctctgcaacggccgccgctgccctc
caccgcgccaaccaactctcctccgcctcctctcaccgccgcctcacgcacttcgccttc
tcccactcacctccgccacgccgccgatttatacccacctcgtcatgcgcctccccacca
ccgaaccctcccaacgccgccgccgccgccatggccgacgacgaggctgccgtcctcccg
cccccgcctccgctgccgccgccttgccgcccccacaggcagctccgcccgagggggtac
caggtggaggtgttcgaggcggcgctgcgggggaacaccatcgcggtgctcgacacgggg
tccgggaagaccatggtcgccgtcatgctcgcgcgcgagcacgcacgccgggtgcgcgcc
ggggaggcgccgcggcggatcgtggtgttcctcgcgcccaccgtgcacctcgtccatcag
caattcgaggtgattcgtgagtacactgacctcgacgtgatgatgtgctctggagcatcg
cgggttggcgaatggggcgccgatcattggaaggaggaagttgggagaaatgagatcgtt
gttatgacgccacagatactgttggatgctctgcggcatgcttttctgacaatgagtgca
gtgagcttgctaatatttgatgaatgtcatcgtgcttgtggaagccatccatatgcacga
ataatgaaggaattttattttgggtctcagtggaggccagatgtatttggaatgacagcc
tcccccgttgctactaaaggtgcttccacactacacaattgtgaagcacacatttctcaa
ctagaactaaccttggatgccaagatatacatcgtagaagatcgaaatgagcttgagagc
ttttcccctcctacaacaattgtgaacaaatactatgatgcttacatggttgattttgat
aatctgaaatcaaagcttcagatattttctgatgagtttgattctttgttggttggtctt
caagaatcgccatctaataaatttaaagacaccgataatatcctagagacttcaagaaag
agcttgtccagataccatgggaaaatattgtacagcctaaacgatcttggtccaattatc
acctctgaggtagtcaaaatacatattgaaagcgttaagccattatgtgattctgaagac
tgcattttttctaaagctagcttgtgcttacatatgtcttattttaaagaagctttaagt
ctaatagaggaaattcttccacaaggatatggtgaactaatgaaatcagaatctggttct
gaggaattaactaaaaggggatacatttcttcaaaagtgaatacgctaatcaacatcttc
aaatcgtttgggtcatcaaatgaagtgctttgcctaattttcgtagacagaattataaca
gctaaagccgtcgaaaggtttatgagaggaattgttaacttctcttgtttttcaatttct
tacttgactggagggagtacatcaaaagatgctctgagtccagcagttcagagatttact
ttggatttgttccgagctggaaaggtgaacttgctttttacaacagatgtgactgaagag
ggcgtcgatgtacctaactgttcttgtgtgatacgcttcgacctacccagaactgtttgt
agctatgtccaatctcgtggtcgtgctagaaggaacaactcggaatttattcttatgatt
gagaggggaaacttgcagcagcaagaacacatatttcgtatgatacagactggttactat
gttaaaaactgtgcactctatagacaccccaatgctttatcctatgacttgtctatccaa
gggatgtacacctaccaagttcagtcaactggagcaactataaccgcagattgctgtgtc
aacctaattcgtaaatactgtgagaagcttcctaaagataggtatttcatgccaaagcct
tcctttgaggtgaccattgaagatggattattcaaatgcacattgacgctacctcgaaat
gcagcatttcaaagtatagttggccctttaagcagttcaagtaatttatccaagcagctt
gtatccctagaggcctgcaagaaattgcatcaactgggagaacttaatgatcatcttgta
cctttgactgaagaacctatggatacagatttcactacagcagatgaaaaatgcatatct
ggaccaggaacaactaaaaggaaggagcttcatggtactacatgtgttcttgctttatca
ggaacttggattcatgacagtgaaaatattacactgaatacttacagaattgattttctt
tgtgaccaagagggtgaaaactatgctgggtttgttctcttaatggaaccagaacttgat
gatgatgtggcaccctcaaaaatggatctgttcctgatccctaataaaatggtctacacc
actgtaactcctcgcggaaaagttcaactaaacaaaaagcagttaggtaaagggaaattg
ttccaagaattctttttcaatggaatctttggtagattatttcatggttctcgaaaaagt
ggagcacaaagggattttattttcaaaaagggtcatgaaatacagtggaacacggaaagc
atgtacttgcttttacctttgagggattcttcatatatccaggatgacctaagcatacac
tgggaagcaattgaatcttgtgctggtgcagttgagcagttgtggagttcgtatcaagga
gatgaaaatgtcattcctgtaaattgtattccacaaaaaagaagagggggccaagaagaa
attattcatctggccaataagtctcttcattgttccagcatcaaagattcagtcgtgcta
tcactgcatacaggaaggatatacactgttcttgatttgatcttagacacaactgcagag
gactcgtttgatgagatgtgtaaggggaaagcctcaccttttacttcatttgtggactat
taccatcaaaagtatggtattattattcaacatccagaacaaccactattgctgttaaag
caaagccacaatgcacacaatcttctcttttcaaaattgaagtatctagatggctccact
ggcaaacctctgctcatggaaaaagaacaaattcatgctcgggttccacctgaactactt
atccatctcgatgtaacaactgatattctgaagtcattttatttactcccttctgtaata
catcggcttcagtcacttatgctagccagccagcttcgcagagaaattggttacaatcaa
cacataccagtcactttgattttggaagctataacaactttaagatgctgtgagacattt
tctctggagcgtttagagctgttaggagactccgtgctaaagtatgtggtaggatgtgac
cttttcctaaggtatcctatgaaacatgaaggtcagctctctgatatgagatccaaggct
gtctgcaatgctacacttcataaacatggaatatggcggtcgttgcagggttatgtacgt
gataatgcttttgacccacggcgttgggttgctcctggacagatatcgttgcgccctttt
ccttgtaactgtggaatcgagactgcatttgttccttctcatagaaggtatatccgagat
gacccatctttttttgtgggaaaaccatgtgacagaggtcataggtggatgtgctcaaaa
acaatatctgattgtgttgaagcactggttggagcatattatgttggtggtggcattgct
gctgcactttgggttatgaggtggtttggaatcgatatcaaatgtgatatgaagctattg
caggaagtgaagttcaatgcatctcatttatgctccttatcaaaaataaatgacattgag
gaactggaagcaaaactgaagtacaacttctcagtcaagggccttcttttggaagccata
actcatccatctctgcaggaattaggtgttgattactgttaccagcgtcttgaatttctt
ggtgattctgtgctggatctacttcttacacgtcatctctatgctactcatactgatgtt
gatcctggagaattaacggatttacgctccgctttggttagtaatgagaattttgcacaa
gcagttgtaagaaacaacattcacagtcatctacaacatggatccggaatacttttggag
caaattactgaatatgtcaggtcaaatttggagtgtcaagggaaagagagtgaattcctt
caacatactacatgtaaagtacctaaggttcttggtgacattatggaaagcatcgctggt
gcagtatttatagacaccgattttaatgttgacatggtttgggagattttcgagccattg
ctttctccactgattacacctgataagcttgcattgccaccttaccgtgagttgctggag
ctatgcagtcacattggttgcttcttaaattcaaaatgcaccagtaaaggagaagaagta
attatagagatgtcactgcaactacgagatgagctgctggtagcacaagggcatgacaga
aacaaaaagagggcaaaggcaaaagcagcatctcgtattttggcagatcttaagcagcaa
cagggtctttcaattaaacaatgtttgtccaaggctaaacagctggatatcgtgacttca
gatcttcagtttgacttgacaagttcaggaacacaactcagttattctgatttgaatgac
tatcatatcctagaaggtctttcctcagtaaagaaagaagttgtgcttccactcaaaatg
gagaaaggtggacctcgaagtgcgcttttcaagctatgcaagattttgcagtggccaatg
ccagaattcgaatttgtggaacaaaggttcaggactcctattgttatggatggggcgaca
acaacaaacttcaatagctttgtttcgacaatcaccttgcacatacctgacgcaacaacc
attacatttcaaggtgagcgacgtactgacaaaaagagtgctcaggattcagcatccttg
atgatgcttcacaagcttcaagaactcaagatctgtatatgcaagacttag

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