Oryza sativa japonica (Japanese rice) (RefSeq): 4348951
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Entry
4348951 CDS
T01015
Name
(RefSeq) nijmegen breakage syndrome 1 protein isoform X1
KO
K10867
nibrin
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4348951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
osa03032
]
4348951
03400 DNA repair and recombination proteins [BR:
osa03400
]
4348951
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
4348951
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
4348951
BRCA1-C complex
4348951
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FHA
Nbs1_C
BRCT
Yop-YscD_cpl
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
4348951
NCBI-ProteinID:
XP_015614711
UniProt:
Q7XD82
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All DBs
Position
10:18434368..18438258
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AA seq
560 aa
AA seq
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MVWALTPVDTVRGAQRCYIFAAGTYKVGRKDCDVIVQTDTSISRVHAEIVVEKMVAWDPQ
SGAPANPSYVRVVDRSKYGTFFNKVQGTQGSRLHKDEDAMLADGDTVTFGTGNATFRLSF
VPIVVFFHGKKSGRISPCLQAVMTSIGAYATRKWSDECTHVLVDESCSLTPELLDAVLAK
KQIVLGDWFKVMAEKNIHTEMPSSTQYIPKLTLDGMEIQVVEIKLIESCLAGYTFILGSS
EKYKFGDKLHALLESTGAKYLHVDEFCANSQDSGAGENDKDILLVPAKSPLEFSKIRGLF
PLSKITDVKLFAAILSGHLEATAIEPPAYIVASSNSTDETIVVDSDVEIDTATSDHTVAA
SKSEHHIEHISDDKKEVVAISEEDAVNLVEAKTSINLHSDQEKDEIVKPMEEDVKVIEKT
ATMRGFKVEGEDIPVMTKVPKDETLDSRDETCHVIYTQNLVVKSILQSARAESIETGGIN
FKRFRKRGAVSGNSFKDLIPYSREPYRESDYERGTVTDFMREEKKRRQMEAIAEDLFNNA
KPKKKAAAGSSIHTMLTGRR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggtgtgggcgctgacccccgtcgacacagtgcgcggggcgcagaggtgctacatcttc
gccgccgggacgtacaaggtcggccgcaaagattgcgatgtcattgttcaaacggacaca
tcgatatcgcgagtccatgcagagattgtggttgaaaagatggtggcctgggatccacaa
tctggcgcaccagctaacccttcctatgtccgtgtagttgaccgctcaaagtatgggaca
tttttcaacaaggtacagggaacacagggtagtcgccttcataaagatgaagatgcaatg
cttgctgatggggatactgtaacttttggaactggcaatgcaaccttcaggttgtcattt
gtccccatagtagtcttttttcatggaaaaaagtcagggaggattagtccatgtttgcag
gcagtaatgacatccattggtgcatatgctactcggaagtggagtgatgaatgcactcat
gtccttgttgacgagtcatgttcattgacacctgagctcctagatgcggttttggcgaaa
aagcagatcgtcctgggagactggtttaaggtgatggctgaaaagaacatacacaccgaa
atgccttcttctacacagtatattccaaagttgacccttgatgggatggagatacaggtg
gtggagatcaagctcatagagagctgccttgcaggctatacttttatcttggggtcatca
gaaaagtataaatttggagacaaactacatgctttactggaatctactggagcaaaatat
ctgcacgttgatgagttttgtgcaaacagccaggactctggagctggtgaaaatgataaa
gatattcttcttgttcctgcaaaatctcctttggaattcagtaagatacgcgggctattt
cctttgtccaagatcaccgatgtaaagctctttgctgctattttatctggtcacttagaa
gcaactgccattgaaccgccagcttacattgttgcatcctcaaattcgacggatgagact
attgtggtggactctgatgtagaaattgatactgcaacttctgatcatactgttgctgct
agcaagtctgaacatcacattgagcatatttctgatgataaaaaggaagtcgttgctata
tctgaagaagatgctgtaaatttggtggaagcaaagaccagcattaatcttcacagtgac
caggagaaagatgagattgtgaaacctatggaggaggatgtcaaggtcatagagaaaaca
gcaacaatgcgtggtttcaaagttgaaggcgaggacattcctgttatgaccaaggtgcca
aaggatgaaactttggacagcagagatgagacttgtcatgttatatatacccagaatctg
gttgtgaaaagcatccttcagtcagctcgtgccgaatccatagaaactggtggcattaac
ttcaaacgctttagaaagagaggagcagtgtctggaaacagcttcaaggacctaatcccg
tattcacgagaaccatacagagaatctgattacgagcgtggaacggtaactgacttcatg
cgagaggagaagaagcggaggcaaatggaagccattgcagaggacctcttcaacaatgca
aagccaaagaagaaggcagctgctggtagttcgattcacaccatgcttaccggccgcaga
tga
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