KEGG   Oryza sativa japonica (Japanese rice): 4348995
Entry
4348995           CDS       T01015                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:osa04812]
    4348995
Cytoskeleton proteins [BR:osa04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     4348995
SSDB
Motif
Pfam: Katanin_con80 WD40 Beta-prop_EML_2 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_DCAF4 NBCH_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_IFT122_1st eIF2A WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IP5PC_F Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_RIG_1st Beta-prop_VPS8
Other DBs
NCBI-GeneID: 4348995
NCBI-ProteinID: XP_015613576
UniProt: Q337H9 Q0IWQ5
LinkDB
Position
10:complement(join(19489905..19489983,19490091..19490159,19490268..19490384,19490454..19490569,19490650..19490724,19490806..19490931,19491031..19491092,19491169..19492107,19492224..19492347,19492418..19492561,19492652..19492726,19492860..19492883,19493526..19493596,19493806..19493908,19494056..19494282,19494411..19494528,19494682..19494812,19496727..19496754))
AA seq 875 aa
MATKRAYKLQEFVAHASDVNCVKFGRKTSRILITGGEDQKVNLWAIGKPSSILSLSGLTS
PVESVSFDSSEAMIGAGASSGTIKIWDVDEAKVVRTFTGHRSSCASLDFHPFGEFFASGS
SDTNMKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHD
FRNHEGPINCLDFHPHEFLLATGSADKTVKFWDLETFELIGSSGPENSREYFVPASVVRS
MTFNKDGKSLFCGLHESLKVLSWEPIICHDVVDVGWSTLGDLIVHEGKLLGCSYNQSCAG
IWVVDLMKIEPYAVSIAEAHLNESVNRSIQADNSISSVLGRLSVSRSPAKEASSDTLLKL
SMSASKEVPVPASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDY
AVPITTPRIRSKVDLSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIP
KVDSGPNLSKVLTTDLTIVEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKA
GDIITHKETPETALTVNMDRDFRRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINL
SGSAITESVKSNEGGDWYNASSFVKPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVE
HGPSNLSASYERNQYAPTLHNLRRRSSVAREQSASAGDEDDIADLMENHQEFIHAVKSRL
TKLEVVYRCWHNNDVKGSIDATRRIQDLDVTADIISVLMENDNSITLDICTCVLPLASSV
LEKSSYDRHLKVALEMILKLVKSFGSTISSAVSSTPPVGVDIEAEQRLNRCNLCFLELIK
VHSVLFALTRRQGEVGRSAQELSLFLQDIFQLTSR
NT seq 2628 nt   +upstreamnt  +downstreamnt
atggccaccaagcgcgcgtacaagctccaggagtttgttgcgcatgcttccgatgtcaac
tgtgtcaagtttgggaggaagacatcaagaatcctcatcactggtggggaggaccaaaag
gtcaatctttgggccatagggaaacccagttccatcttgagcctgtcaggccttacgagt
ccagttgagtcagtgagctttgactcatctgaagctatgataggtgctggagcatcaagt
gggacaataaagatatgggatgtagatgaagcaaaagtcgttcgtacttttactggacat
agatcgagttgtgcgtcccttgatttccatccttttggagaattcttcgcttctgggtct
tcagacactaacatgaaaatatgggatatgcggaaaaagggatgcattcacacatataaa
ggtcacacacggcggattgatgtgcttagattcactcctgatggccggtggattgtctct
ggtggatctgataactctgtaaagatctgggatttgacagctggaaagctcttgcatgac
tttaggaatcatgaaggcccaattaactgcttagattttcacccccatgagttcttattg
gctacaggttcagctgataagacagttaagttttgggaccttgaaacttttgagttgatt
ggttcttctggacctgagaatagccgggaatactttgtgccagctagtgtagttcggtct
atgacattcaacaaagatggtaaatcacttttttgcggattacatgaaagtttgaaggtt
ctttcctgggaacccatcatatgccatgatgtggttgatgttggctggtccacattaggg
gatctaattgttcatgagggaaaacttcttggttgctcatataaccaaagttgtgctgga
atatgggtcgtggacttgatgaaaattgaaccgtatgctgttagcattgctgaagcacat
ttgaatgaaagcgtaaataggtcaatacaggctgataatagcatatcatcagtgttggga
aggttatcagtttccagaagcccagccaaggaagcatcttccgatactttgcttaaactc
tcaatgtctgcttcaaaagaagttcctgttccagcttcttctgcagtgacaaagaaacta
ccaaaagaacctataacaagcaatattcggctcacaagatctgattctctaccagttgtt
tctcctagggttagattgaacccaaagttctctgatgaccagaagaggcagacagattat
gctgtgcctataacaactccaagaattcgctccaaagtggatctctctataggtgctaga
gcattccatcgtaactcagtaccatcggttgctcccacaaatagatccaggtccaaaata
tctgcatatagtagtgaaggatcgtcgttcatccctgttgttgtccctaggcatatccct
aaagtggattctggtcccaatctcagtaaagttctcactactgatttaacaattgtcgag
cctcaagacatagaacgaggtggtctggctgtggattgtggagaagatgataaattggtg
tgtgtgattgattcaaggagctcaaatatgggtgtacaaaatggccgtagaagaaaagcc
ggtgatattattacacataaagaaaccccagagactgctttgacagttaatatggatcgt
gacttcagaagaaaggctcctgaaactgaaagtatgcaacaggacatatttcattcagag
cccattagttcaaaatgtaaatatattaaagaaacttcaggtgctggagacattaacttg
tctgggtcagccattactgaaagtgtcaagtctaatgaaggtggtgactggtataatgca
tcttcttttgtaaaaccaaatttgactgttggaaggaatccagagacttcatacatcaac
agaagaacaatgtttggattgagacattcaacggattcaagtgaaaaacacgctgttgaa
catgggccttccaatttgtctgcaagttatgagagaaatcagtatgcaccaacactacat
aacttgaggaggcgctcttcggttgctagagaacagagtgcatcagctggtgatgaagat
gatattgctgatctgatggaaaaccatcaagaattcattcatgcagtgaagtctcggcta
acaaaactagaggtggtttacaggtgttggcacaataacgatgtaaagggatctattgat
gctacacgcaggattcaggatcttgatgttaccgccgatataattagtgttctgatggag
aatgataattctatcacactagatatttgtacttgtgtcttacctcttgcctccagtgtt
cttgaaaaaagcagctatgacaggcacctgaaagttgccttggagatgatccttaagctt
gtgaaaagctttggttctacaatatcttcagctgtgtcatctactccaccagttggtgta
gacattgaggcagaacagaggctcaatcggtgcaatttgtgctttctagagctgataaaa
gttcacagcgttctctttgccctgacacggcggcaaggcgaggttggaagatctgcacag
gagctaagcctctttcttcaggatatctttcagctgacaagcagatag

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