Oryza sativa japonica (Japanese rice): 4349053
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Entry
4349053 CDS
T01015
Symbol
OsJ_32082
Name
(RefSeq) dEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4349053 (OsJ_32082)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4349053 (OsJ_32082)
03036 Chromosome and associated proteins [BR:
osa03036
]
4349053 (OsJ_32082)
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4349053 (OsJ_32082)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
4349053 (OsJ_32082)
mRNA degradation factors
5'-3' decay
Decapping complex
4349053 (OsJ_32082)
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
4349053 (OsJ_32082)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
Sirohm_synth_M
Motif
Other DBs
NCBI-GeneID:
4349053
NCBI-ProteinID:
NP_001390977
LinkDB
All DBs
Position
10:complement(join(19928707..19928785,19928863..19928936,19929832..19929920,19930578..19930758,19930845..19931096,19931197..19931435,19932122..19932356,19932514..19932574,19933074..19933429))
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AA seq
521 aa
AA seq
DB search
MHHPRARYPPGYTSGGGGGGGGGGGGGRGNGGGGFGGGGGGGGGNHGYYGRGPQPQPQQQ
HYHHQAQQLHQHQQQQQHAQRNSSSQQQQWLRRDQATAAAASGEVAARTAAQLEAVDSSS
EDWKAQLNLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPI
ALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGK
YLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADK
LLAPEFQPSIEQLIHFLPANRQLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGIT
QYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQ
DHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGH
LGLAVNLITYEDRFNLYRIEQELGTEIKTIPPQIDLAVYCQ
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaccccagggcgcgctacccgcccggctacacctccggcggcggcggcggaggc
ggaggcggaggaggaggcggccgtggtaatggcggcggcggatttggaggaggtggcggc
ggcggcggcgggaaccacggctactacggccggggtccgcagccgcagccgcagcagcag
cactaccaccaccaggcgcagcagctgcatcagcatcagcagcagcagcagcacgcgcag
aggaacagctcctcgcagcagcagcagtggctgcggcgggaccaggccacggcggcggct
gcgtccggggaggtcgcggcgaggacggcggcgcagctggaagccgtcgactcgagctct
gaagattggaaggcacaattgaatttgccagctccagatacacgttataggacagaggat
gtcactgcaacgaaaggcaacgagtttgaggattactttttgaaacgtgaactactaatg
ggaatatatgagaaaggattcgaaaggccatcacctattcaggaagaaagcattccaata
gctctgactggtagcgatattcttgcaagagctaaaaacggcactggcaagactgccgca
ttttgcattcccgcacttgaaaaaattgatccagagaaaaatgccatacaagttgttata
ttggtaccaacacgggaactagctctgcagacctcacaagtttgtaaagagcttgggaag
tatctgaatattcaagttatggttagtactggtggaaccagcttaaaggatgacattatg
cgtttgtatcaacctgttcatttacttgttgggacacctggtcggatactagatctaact
aggaagggcatctgtgtgctgaaggattgttcaatgctcgtaatggatgaggcagacaaa
ctgttagctccagagtttcagccttccatagagcaactcatccatttccttccagctaat
cgtcaactattgatgttttcagcaacctttccagtaaccgttaaggatttcaaagagaaa
tacctacctaggccttatgttattaatctcatggatgaactaacactaaagggaattaca
caatactatgctttcgtggaagaaagacagaaagttcactgtctgaatacacttttctcg
aagcttcaaataaaccagtccattatattctgtaactctgttaacagagttgagctactg
gctaagaaaatcaccgagcttggctattcatgcttctacattcatgcaaaaatgttgcaa
gaccatcgaaaccgagtgtttcatgattttcgcaatggtgcttgcagaaaccttgtgtgc
acagatctgtttacaagaggaattgacatccaagctgtgaatgttgtcattaattttgac
ttccctaagacttctgaaacatacttgcatagggttggtcgttcagggagatttggacac
cttggtttggcggtgaacttaatcacttatgaggaccgtttcaacttgtatcggattgag
caagaacttgggacagaaataaaaacgatacccccacaaatcgatctggcagtgtattgt
caatga
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