KEGG   Oryza sativa japonica (Japanese rice): 4349288
Entry
4349288           CDS       T01015                                 
Name
(RefSeq) syndetin
  KO
K23288  syndetin
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4349288
Membrane trafficking [BR:osa04131]
 Protein recycling
  Others
   EARP complex
    4349288
SSDB
Motif
Pfam: Vps54_N Syndetin_C
Other DBs
NCBI-GeneID: 4349288
NCBI-ProteinID: NP_001410027
LinkDB
Position
10:join(22042531..22042785,22042891..22043058,22043138..22043209,22043508..22043586,22043822..22043886,22043980..22044069,22044362..22044451,22044707..22044793,22044988..22045071,22045201..22045320,22045399..22045427,22045954..22046086,22046555..22047007,22047517..22048004,22048086..22048149,22048227..22048329,22048443..22048594,22048702..22048827,22048970..22049040,22049202..22049264,22049929..22050001,22050483..22050602,22050691..22050768,22050945..22050995,22051097..22051207)
AA seq 1074 aa
MRGDAPAASSSSSASSPPSLFGGGDGGGELFGSAPGPLVFLPLLLIQGGGMDLSRVGEKL
LSSVRSARSLGLLPPTPPPPASRPEVPARAAAAAAAARAIAGLPPHEKISLPSNSEDLVS
IYGSNPQGHAVDELEEVFFQEEFDPIKYILQSIPAEGDSSYFDKQSTLRLAQLDKIAERL
SHHVMGHHEEMVKGMQLVMELEQDLKVANVICMNGRRHVSSSKNEVSRDLVVNVKSKKKQ
ALLDVLPILTELRNAQDMQMELESFVEKENYFQAFQLLPEYLQILENYSGLSSVQEMGRG
IEAWLARTIQKLDTHLLGVCQTFHEESYLTVIDAYALMGDIGGMAEKMQSFFLQEVLSQT
HYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEPKLRPCLLRTFQSLFSLMCSYYTIMSFC
PGVKSIESEGENSLTGRNNTSQSADESLGDSGRGHAAEMSDRTSSSDVSNPDTSTSGTDS
PFYQLRTDAAKLVAHAFERGRRNLWQLATSRLSVLLSSSVVFSTSTYQFLKNYEDLTIFI
LAGEAFCGFEASEFRQKLKGICLNYSVAFHRQNIYALKMVLERESWTIMSAEASRIISLA
GLTGDGAALISPTSRISTLPIHGSTMSDTGKEKNGFAAWTKIENPFFYKVENGTTESPKS
NMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDLLADFIDEDSQLPSRLAKTKIVKGNSSH
WKDGDISSQTGSSLSLLRMMDKYARLMQKLEIVNVELFKGICQLFGIFYHYIYETFGNQD
RGQSGKSLPDHQSFRLRVALSKITQDSDQWIKPQSISYSPSSPVSMDVMPTAPPSSMFTL
YGLKERCAAAETISLVARVLNRSRAHLHSVLSQSNTSILEEFFGTMVDSVPDLAEHIHRT
SARMLLHINGYPDKIANAKWEVKELGMEHNGYVDLLLGEFKHYKTRLDHGGISKELQDLL
LEYGIDSIAEVLVEGLSRVKRCTDEGRALMSLDLQVLINGLLHIVSANVRPKLQIVDTFI
KAYYLPETEYVHWARSHPEYSKSQVVGLVNLVATMKGWKRKTRLETIERIEAGP
NT seq 3225 nt   +upstreamnt  +downstreamnt
atgcgaggcgacgcgcccgccgcctcctcctcgtcatcggcatcgtcacccccctcgctc
ttcggcggcggagacggcggcggcgagctgttcgggtccgcgcctgggccgctcgtcttc
ctgcccctgctcctgatccagggcggcggcatggacctctcccgcgtcggcgagaagctc
ctcagctccgtccgctccgcgcgctccctcggcctcctccctcccaccccaccgccgccc
gcctcccgccccgaggttccagctagagctgcggcggcagcggcggccgcacgtgcgatc
gctgggctgccaccgcacgagaagatcagcctgccttcgaattcggaggacttggtctcc
atctacgggagcaacccgcaggggcatgccgtggatgagctcgaggaggtgttctttcag
gaggagttcgacccaataaagtacattctgcaaagtatccctgcagagggtgattccagc
tatttcgataagcagtctactttgagattagcgcagctcgacaaaattgcagaacgacta
tcacatcatgttatgggtcatcatgaagaaatggtgaaggggatgcagttagtgatggag
ttagaacaagatttaaaggttgcaaatgtgatctgcatgaatggacggaggcatgtatcc
tcttcaaagaatgaggtatcgagggatctggttgtcaatgtaaaatcaaagaagaaacaa
gctttgctggatgttcttccaattcttacagaacttcgtaatgcacaagacatgcagatg
gaacttgaaagttttgtggagaaagaaaactattttcaggcgtttcaattattgcctgaa
tatttgcaaatcttggagaactattcaggcctttcttctgtacaagaaatggggcgtggg
attgaggcatggttggcacgaacaatccaaaaattagacacccatttactaggggtttgt
cagaccttccatgaggaaagctatctaactgttattgatgcctatgcgctgatgggtgac
atcggtggcatggctgaaaagatgcagagtttctttttgcaagaagtactctctcagact
cattatgtcctgaaagaaatgttggaagaggaggttggaaataatacgcagagaaataga
tttacatatagtgatctttgtgctcaagttcctgagcccaagctccggccctgcttatta
agaacctttcagagtttgttttcattgatgtgctcatattatactataatgagcttttgc
ccaggagtaaagagtatcgagtccgagggcgaaaactctctgacaggaaggaacaacaca
tcccagagtgcagatgaatcattaggtgattcaggtagaggtcatgcagctgaaatgagt
gacaggacatcatcttctgatgtcagcaatcctgatactagcacatcaggaacagattca
ccattctatcagctaaggacagatgctgcaaaacttgttgcacatgcatttgaaagaggg
cggagaaatctttggcaactagcaacaagtcgcttatctgtattactgtcctcttcagtt
gttttctcaactagcacgtatcaatttttgaagaactacgaagatctcaccatttttatc
ttggctggtgaagcattttgtgggtttgaagcgagcgagttccggcaaaagttgaagggt
atctgtttgaactattcggtggcctttcaccggcaaaatatctatgcactaaagatggta
ctggaaagggaatcttggacaataatgtctgctgaagcatcacggataattagtttagca
ggccttaccggtgatggtgctgctctaatctcaccaaccagtcgtatctccaccttgcca
atacatggttctactatgtctgatacagggaaggaaaaaaatggatttgctgcttggact
aagattgaaaacccatttttttacaaggtagaaaatggcaccacggaatccccgaagtcc
aatatgatgttcaactcagttgacaatagttctgcccatggaagtactaacaatggcaat
ggaaataaagcacctcttgacgaagagaatgaagaccttcttgcagattttattgatgaa
gatagtcagttgcctagtaggttagcaaaaacaaaaattgtgaaaggcaattcttcccat
tggaaggatggggacatttcatcacagacaggatcatcgctttctttattaaggatgatg
gataaatatgccagattaatgcaaaagctggaaattgtcaatgttgagctttttaagggt
atatgccaactgtttggcatcttttatcactacatatacgagacatttgggaaccaggac
aggggtcaaagtggcaagtctttacctgatcatcaatcgtttcggcttagagtggctttg
tcaaaaataacacaagactctgaccagtggatcaaaccacagagtatttcatattcacct
tcatcacccgtatcaatggatgtgatgcctactgcgcctcccagctcaatgttcaccttg
tatggtttgaaggagcgctgtgcagctgctgaaacaatatcattggttgctcgagttttg
aacagatctcgagcacatctacattccgttctgtctcaaagtaacacttccattcttgaa
gaattctttgggacaatggttgactctgttccagatttggctgagcacattcatagaaca
agtgcaaggatgcttttgcatatcaatgggtatccagataagattgcaaatgccaaatgg
gaggtcaaggagcttggcatggagcataatggctatgttgatttgttattgggtgaattc
aagcactacaaaactagattggaccatggaggaatttccaaggagctccaagacctcttg
ctggagtatggcatagatagcatcgcagaagttttagttgaaggtctctctagggtaaaa
cggtgcacagatgaaggacgggctttgatgtcactggaccttcaggtactaattaatggg
ctgctgcacattgtatccgcaaatgttaggccaaagctgcaaattgtggatactttcata
aaggcttattatttgccagagaccgagtatgttcattgggcacggtctcatccagaatac
agcaaaagtcaggttgtcgggttggttaacctggttgcgactatgaaaggatggaaacgg
aaaacgaggttagaaaccatcgagaggattgaggcaggaccatag

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