KEGG   Oryza sativa japonica (Japanese rice): 4349298
Entry
4349298           CDS       T01015                                 
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
  KO
K12600  superkiller protein 3
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4349298
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4349298
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     4349298
SSDB
Motif
Pfam: TPR_2 TPR_1 TPR_16 TPR_11 TPR_14 TPR_17 TPR_8 TPR_CcmH_CycH TPR_7 TPR_19 TPR_9 ARM_TT21_C TPR_21 NatA_aux_su BTAD
Other DBs
NCBI-GeneID: 4349298
NCBI-ProteinID: XP_015614539
UniProt: Q336U8
LinkDB
Position
10:complement(join(22138527..22138714,22138795..22138998,22139161..22139804,22140056..22140295,22140391..22140485,22140594..22140967,22141111..22141162,22141331..22141549,22141929..22141994,22142106..22142163,22142257..22142378,22142698..22142869,22142963..22143210,22143288..22143368,22143440..22143580,22143745..22143837,22143928..22143978,22144082..22144165,22145078..22145200,22145300..22145542,22145638..22145718,22145804..22145815))
AA seq 1196 aa
MPEKAAEANLRKQLEQTLAGEPSSPLHHYNLGVFLWDRAEAAAREEGEEEEEVRRLRAAA
AERFLAAAKLDPNDGVPFRFLGHHYALAGDAQRAAKCYQRAATLNPDDAEAGEAVCDLLD
LEGKESLEIALCKEAAGKSPRAFWAFRRLGYLQVHQKKWSEAIQSLQYAIRGYPTCADLW
EALGLAYHRLGMFTAAVKSYGRAVELDGSKVFALIESGNIQLMLGYFRKGVEQFRSALEM
APQNHSAYFGLASALLAWARQCVMTGAFGWAASLLKEACKAAKVCTSLTGNLSCVWKLHG
DAQLALARCFPWGDGNIKGGMDDGTFRTTVLEWRNTCLLAANGAKFSYQRALHLTPWEAN
IHNDTAICLDLIYTIEENNSLDPITWELPEKMSLGGLILEPVNKDFWVTLGSVSSNQALK
QHSFIRALHLDMSLSEAWAYLGKIYRHSGDKQLARQAFDRARSIDPSLALPWAGMSAENY
HQPGDGPVNECFESCLRAVQILPLPEFQIGLGTIAARSGELLSPQVLMAVRQAVQRAPHY
PESHNINGLVSEVRSDFQSAIASYRQAKFALDMMRNSKTDCRCHIADISVNLARSLCKTG
LATEAVRECEELKRQGFLNDDGLQIYALSLWKLGRHDEALSVSRNLAENLSSMKQESATA
ALGFICTLTYNISGKDSAAAVIHKLPGQLNYSTQLKFIISALDALQPNKRFQLPQLSMPP
RLTSYEVMSEVHSNIALGNAIGGESDKFLRVDGGLSYLKKVLHMYPDCSLVRNQLGSLLL
SSEDWMASHKAVRVTSLSRGYTSNRGLRSPHQIQACAAVSCYATCTSYPKFSFPTCEDQY
LSGYNAICRLQRWVHLEPWNQDARRLLVLTLFQKAREEKYPKHICTILKRLILQVLSSGS
NSQDNKVVQYGNYLLLLVASEVSLQSGDHGNCIAQATEALGVTSSSVDSFFAHLQLCRAY
VMQGNLLNSRSEYMKCLQNRTDTEIGWVILKQLASICSLEGTPDEIEIHLGGCVERKGSN
ASKWMSLFYLACAQCSVWNEDFASAEKAIAQACAEGDPDSCVLFLNGAICMDIAWRFAAP
QFIARAASSLRKAQQKSLASLPIVSLLLAQAEGSLGSKAKWEKNLRLEWFSWPPELRPAE
LYFQMHLLATQSSAATSQQNQLVETMQTPEKWLLRAIHLNPSCSRYWTALMQLVYV
NT seq 3591 nt   +upstreamnt  +downstreamnt
atgcctgaaaaggcggcggaggccaacctccgcaagcagctggagcaaaccctcgccggc
gagccatccagcccgctccaccactacaacctcggcgtcttcctatgggaccgcgcggag
gcggcggcgagggaggagggcgaggaggaggaggaggtgaggcggctccgtgcggcggcg
gccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgcttc
ctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgctatcagcgg
gcggcgacgctcaaccctgatgatgccgaggctggggaggcggtctgtgatttgctagat
ttggagggcaaggaaagcttggagatcgctttgtgcaaggaggcagctggcaagtcaccc
cgggcattttgggcgttccggaggttggggtacttacaggttcatcagaagaaatggtca
gaggctatacagagccttcagtatgcaatacgaggttacccaacatgtgcagatttatgg
gaagcactcggtctggcataccaccgtttgggcatgtttactgcagcagtaaagtcgtat
gggcgagctgttgaactggatggttccaaggtctttgcgttgatagaaagtggaaacatc
cagctaatgcttggttattttagaaagggtgttgaacagttccgctctgccttggagatg
gctcctcaaaatcattccgcgtactttggtcttgcttctgcattgcttgcttgggcaagg
cagtgtgtaatgactggggcctttggctgggcagctagtctgttgaaggaagcatgcaaa
gctgccaaagtttgtacttctttgactggaaacctttcctgtgtttggaaactgcatgga
gatgctcagctcgcacttgcaagatgctttccatggggtgatggtaatatcaaggggggt
atggatgatggtactttcaggactactgtacttgagtggagaaatacatgtttgttggct
gcaaatggtgcaaaattctcataccaacgagctttgcatctcactccctgggaagctaat
attcacaatgacactgctatatgtcttgatctcatttataccattgaggagaataatagt
ctagatcccataacttgggaactgccagagaaaatgtcgttgggtgggttgatactggaa
ccagtcaataaggatttttgggttacattgggctcggtgtcaagtaatcaagctttaaaa
cagcattcttttatcagagcactgcatcttgatatgtctctctctgaagcttgggcatac
cttggaaagatttacaggcattcaggtgataagcagttggcaagacaagcatttgatcga
gctcgaagcattgatccttcactggccttgccatgggcaggaatgtcagctgaaaattac
caccagcctggggatgggccagtaaatgaatgttttgaaagctgcttgcgggctgtgcag
atacttcctcttccagagttccagattggtcttggaacaattgctgctcgttctggtgaa
cttctatcacctcaggtattgatggctgtaaggcaagctgttcaacgggcacctcattac
cctgagtcgcacaacataaatggcttggtttctgaagtgcgatcagacttccaatctgca
attgcatcgtaccgacaagcaaaatttgctttagatatgatgcgcaactccaaaacagac
tgcagatgtcatattgctgatatttccgtgaatcttgcccggtcactatgtaagactggt
cttgcaactgaggcagtgcgggagtgcgaagaattgaaaagacaaggatttctgaatgat
gacggattgcagatatatgctctttcattatggaaacttggtcggcatgatgaagctctt
tcagtatcaagaaacttggctgaaaacttatcgagtatgaagcaggagagtgcaactgca
gctttaggattcatatgcacgttgacatacaacatctctgggaaggactctgcagctgcg
gtcattcataaactgcctggtcaactcaattacagcacacagctgaaatttattatctct
gcattagatgctttacagccaaacaagcgttttcagttaccccagctgagtatgcctcct
aggcttacatcgtatgaagtcatgagtgaagtccactcaaatattgctcttggaaatgct
attggtggggaatcagacaagtttttaagggttgatggtggcctgtcttacctgaaaaag
gttctacacatgtatcccgactgcagtttagtaagaaaccaacttggatctctgctactg
tcaagtgaagattggatggcttctcataaagcagtaagggttacttcattgtcccgggga
tatacatccaataggggcttaagatctccacaccaaattcaagcatgtgcagcagtttct
tgctatgctacctgcacttcttacccaaagttctcttttccaacatgtgaagatcaatac
ctaagcggatacaatgcaatatgccgcctgcaaaggtgggttcatctagaaccgtggaac
caagatgcacgtcgcctccttgtacttacccttttccaaaaagcacgtgaagaaaagtat
ccgaaacatatctgcaccattttgaagaggctgattttgcaagttctctccagtggtagc
aattcacaagacaataaggtggttcagtatgggaactacttgttacttcttgtggcttca
gaggttagtttgcaatctggtgaccatggcaactgtattgctcaagctactgaagctctt
ggagtaacttcttcgagcgtggattctttctttgcacacttgcaactgtgtcgggcctat
gtgatgcaaggcaatcttttgaactctaggagtgagtacatgaaatgcctgcaaaaccgt
acagatactgaaattggctgggtaatacttaagcaacttgcatctatatgttcactggag
ggtacccctgatgaaatagagatacatctcggaggatgcgttgaaaggaaaggtagcaat
gcatccaaatggatgtctcttttttatctagcatgcgctcagtgttcagtatggaatgag
gactttgcaagtgctgaaaaagctattgctcaggcatgtgctgaaggggatcctgacagc
tgtgtcttatttctcaacggcgcaatttgtatggacattgcttggaggttcgcggcccct
caatttatagcccgtgcagcttccagcctcagaaaggcacagcagaaatcacttgcttct
ttacctattgtgtccctcttactggcccaagcagaaggcagccttggctccaaagccaag
tgggagaaaaaccttcgtctagagtggttctcatggcccccagaattgaggcctgctgag
ctctatttccagatgcatcttctggcaacgcagtcaagtgcagcaacttcccagcagaac
cagctagtggaaaccatgcaaaccccagagaagtggcttctcagggcgatacacctgaac
ccgtcgtgctctaggtactggacggctctgatgcaactcgtgtacgtgtaa

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