Oryza sativa japonica (Japanese rice) (RefSeq): 4349298
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Entry
4349298 CDS
T01015
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4349298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4349298
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
4349298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_16
TPR_8
TPR_17
TPR_14
TPR_12
TPR_7
TPR_9
NatA_aux_su
BTAD
Motif
Other DBs
NCBI-GeneID:
4349298
NCBI-ProteinID:
XP_015614539
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All DBs
Position
10:complement(21444267..21453623)
Genome browser
AA seq
1423 aa
AA seq
DB search
MPEKAAEANLRKQLEQTLAGEPSSPLHHYNLGVFLWDRAEAAAREEGEEEEEVRRLRAAA
AERFLAAAKLDPNDGVPFRFLGHHYALAGDAQRAAKCYQRAATLNPDDAEAGEAVCDLLD
LEGKESLEIALCKEAAGKSPRAFWAFRRLGYLQVHQKKWSEAIQSLQYAIRGYPTCADLW
EALGLAYHRLGMFTAAVKSYGRAVELDGSKVFALIESGNIQLMLGYFRKGVEQFRSALEM
APQNHSAYFGLASALLAWARQCVMTGAFGWAASLLKEACKAAKVCTSLTGNLSCVWKLHG
DAQLALARCFPWGDGNIKGGMDDGTFRTTVLEWRNTCLLAANGAKFSYQRALHLTPWEAN
IHNDTAICLDLIYTIEENNSLDPITWELPEKMSLGGLILEPVNKDFWVTLGSVSSNQALK
QHSFIRALHLDMSLSEAWAYLGKIYRHSGDKQLARQAFDRARSIDPSLALPWAGMSAENY
HQPGDGPVNECFESCLRAVQILPLPEFQIGLGTIAARSGELLSPQVLMAVRQAVQRAPHY
PESHNINGLVSEVRSDFQSAIASYRQAKFALDMMRNSKTDCRCHIADISVNLARSLCKTG
LATEAVRECEELKRQGFLNDDGLQIYALSLWKLGRHDEALSVSRNLAENLSSMKQESATA
ALGFICTLTYNISGKDSAAAVIHKLPGQLNYSTQLKFIISALDALQPNKRFQLPQLSMPP
RLTSYEVMSEVHSNIALGNAIGGESDKFLRVDGGLSYLKKVLHMYPDCSLVRNQLGSLLL
SSEDWMASHKAVRVTSLSRGYTSNRGLRSPHQIQACAAVSCYATCTSYPKFSFPTCEDQY
LSGYNAICRLQRWVHLEPWNQDARRLLVLTLFQKAREEKYPKHICTILKRLILQVLSSGS
NSQDNKVVQYGNYLLLLVASEVSLQSGDHGNCIAQATEALGVTSSSVDSFFAHLQLCRAY
VMQGNLLNSRSEYMKCLQNRTDTEIGWVILKQLASICSLEGTPDEIEIHLGGCVERKGSN
ASKWMSLFYLACAQCSVWNEDFASAEKAIAQACAEGDPDSCVLFLNGAICMDIAWRFAAP
QFIARAASSLRKAQQKSLASLPIVSLLLAQAEGSLGSKAKWEKNLRLEWFSWPPELRPAE
LYFQMHLLATQSSAATSQQNQLVETMQTPEKWLLRAIHLNPSCSRYWTALMQLLNSFGAA
AVLAFSTTVPLSDIAFALLVIPYLVVLSVLAFPQRPGKPNPGAPVFLGRGRFLLRAHDAL
GFLVGAALPALYILDGLRSGDTAGVAAASPHAFLLAAQIFTEGLAAAWPGRFSLPVRAAV
VVMYGARRMFAASEWLRQEMEKRDQFGGGVGGAPAVARRRVVAGRVLAVANLAYWGINLF
AFLLPFYLPKAFNRYYCGSDSKEDDATAAAGAIDADDAKKKDS
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaaggcggcggaggccaacctccgcaagcagctggagcaaaccctcgccggc
gagccatccagcccgctccaccactacaacctcggcgtcttcctatgggaccgcgcggag
gcggcggcgagggaggagggcgaggaggaggaggaggtgaggcggctccgtgcggcggcg
gccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgcttc
ctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgctatcagcgg
gcggcgacgctcaaccctgatgatgccgaggctggggaggcggtctgtgatttgctagat
ttggagggcaaggaaagcttggagatcgctttgtgcaaggaggcagctggcaagtcaccc
cgggcattttgggcgttccggaggttggggtacttacaggttcatcagaagaaatggtca
gaggctatacagagccttcagtatgcaatacgaggttacccaacatgtgcagatttatgg
gaagcactcggtctggcataccaccgtttgggcatgtttactgcagcagtaaagtcgtat
gggcgagctgttgaactggatggttccaaggtctttgcgttgatagaaagtggaaacatc
cagctaatgcttggttattttagaaagggtgttgaacagttccgctctgccttggagatg
gctcctcaaaatcattccgcgtactttggtcttgcttctgcattgcttgcttgggcaagg
cagtgtgtaatgactggggcctttggctgggcagctagtctgttgaaggaagcatgcaaa
gctgccaaagtttgtacttctttgactggaaacctttcctgtgtttggaaactgcatgga
gatgctcagctcgcacttgcaagatgctttccatggggtgatggtaatatcaaggggggt
atggatgatggtactttcaggactactgtacttgagtggagaaatacatgtttgttggct
gcaaatggtgcaaaattctcataccaacgagctttgcatctcactccctgggaagctaat
attcacaatgacactgctatatgtcttgatctcatttataccattgaggagaataatagt
ctagatcccataacttgggaactgccagagaaaatgtcgttgggtgggttgatactggaa
ccagtcaataaggatttttgggttacattgggctcggtgtcaagtaatcaagctttaaaa
cagcattcttttatcagagcactgcatcttgatatgtctctctctgaagcttgggcatac
cttggaaagatttacaggcattcaggtgataagcagttggcaagacaagcatttgatcga
gctcgaagcattgatccttcactggccttgccatgggcaggaatgtcagctgaaaattac
caccagcctggggatgggccagtaaatgaatgttttgaaagctgcttgcgggctgtgcag
atacttcctcttccagagttccagattggtcttggaacaattgctgctcgttctggtgaa
cttctatcacctcaggtattgatggctgtaaggcaagctgttcaacgggcacctcattac
cctgagtcgcacaacataaatggcttggtttctgaagtgcgatcagacttccaatctgca
attgcatcgtaccgacaagcaaaatttgctttagatatgatgcgcaactccaaaacagac
tgcagatgtcatattgctgatatttccgtgaatcttgcccggtcactatgtaagactggt
cttgcaactgaggcagtgcgggagtgcgaagaattgaaaagacaaggatttctgaatgat
gacggattgcagatatatgctctttcattatggaaacttggtcggcatgatgaagctctt
tcagtatcaagaaacttggctgaaaacttatcgagtatgaagcaggagagtgcaactgca
gctttaggattcatatgcacgttgacatacaacatctctgggaaggactctgcagctgcg
gtcattcataaactgcctggtcaactcaattacagcacacagctgaaatttattatctct
gcattagatgctttacagccaaacaagcgttttcagttaccccagctgagtatgcctcct
aggcttacatcgtatgaagtcatgagtgaagtccactcaaatattgctcttggaaatgct
attggtggggaatcagacaagtttttaagggttgatggtggcctgtcttacctgaaaaag
gttctacacatgtatcccgactgcagtttagtaagaaaccaacttggatctctgctactg
tcaagtgaagattggatggcttctcataaagcagtaagggttacttcattgtcccgggga
tatacatccaataggggcttaagatctccacaccaaattcaagcatgtgcagcagtttct
tgctatgctacctgcacttcttacccaaagttctcttttccaacatgtgaagatcaatac
ctaagcggatacaatgcaatatgccgcctgcaaaggtgggttcatctagaaccgtggaac
caagatgcacgtcgcctccttgtacttacccttttccaaaaagcacgtgaagaaaagtat
ccgaaacatatctgcaccattttgaagaggctgattttgcaagttctctccagtggtagc
aattcacaagacaataaggtggttcagtatgggaactacttgttacttcttgtggcttca
gaggttagtttgcaatctggtgaccatggcaactgtattgctcaagctactgaagctctt
ggagtaacttcttcgagcgtggattctttctttgcacacttgcaactgtgtcgggcctat
gtgatgcaaggcaatcttttgaactctaggagtgagtacatgaaatgcctgcaaaaccgt
acagatactgaaattggctgggtaatacttaagcaacttgcatctatatgttcactggag
ggtacccctgatgaaatagagatacatctcggaggatgcgttgaaaggaaaggtagcaat
gcatccaaatggatgtctcttttttatctagcatgcgctcagtgttcagtatggaatgag
gactttgcaagtgctgaaaaagctattgctcaggcatgtgctgaaggggatcctgacagc
tgtgtcttatttctcaacggcgcaatttgtatggacattgcttggaggttcgcggcccct
caatttatagcccgtgcagcttccagcctcagaaaggcacagcagaaatcacttgcttct
ttacctattgtgtccctcttactggcccaagcagaaggcagccttggctccaaagccaag
tgggagaaaaaccttcgtctagagtggttctcatggcccccagaattgaggcctgctgag
ctctatttccagatgcatcttctggcaacgcagtcaagtgcagcaacttcccagcagaac
cagctagtggaaaccatgcaaaccccagagaagtggcttctcagggcgatacacctgaac
ccgtcgtgctctaggtactggacggctctgatgcaactcctcaactcgttcggcgccgcg
gccgtgctcgccttctccaccaccgtgccactctccgacatcgccttcgccctcctcgtc
atcccttacctcgtcgtcctctccgtcctcgccttcccgcagaggcccggcaagcccaac
ccgggcgcgccggtcttcctcggccgcggccgcttcctcctcagggcccacgacgcgctc
ggcttcctcgtcggcgccgcgctcccggcgctctacatcctcgacggcctccgctcgggc
gacacggcgggcgtcgccgcggcgtccccgcacgcgttcctcctcgccgcgcagatcttt
accgagggcctcgccgcggcgtggcccgggaggttctccctccccgtgcgtgccgccgtg
gtggtgatgtacggcgcgcggaggatgttcgcggcgtcggagtggctccgccaggagatg
gagaagcgggaccagttcggcggcggcgtcggcggcgcgcccgccgtggcgcgccgcagg
gtggtggcggggagggtgctggcggtggcgaacctcgcctactgggggatcaacctcttc
gccttcctgctgccgttctacctgcccaaggcgttcaacaggtactactgcggcagcgac
agcaaggaggacgacgccaccgccgccgccggcgccattgacgccgacgacgccaagaag
aaggattcctag
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