Oryza sativa japonica (Japanese rice): 4349446
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Entry
4349446 CDS
T01015
Name
(RefSeq) eukaryotic translation initiation factor 3 subunit B
KO
K03253
translation initiation factor 3 subunit B
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4349446
03012 Translation factors [BR:
osa03012
]
4349446
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
4349446
Translation factors [BR:
osa03012
]
Eukaryotic type
Initiation factors
eIF-3
4349446
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
eIF2A
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_WDHD1_1st
ANAPC4_WD40
RRM_1
Beta-prop_Aladin
Tricorn_2nd
WD40_Prp19
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
4349446
NCBI-ProteinID:
XP_015614131
UniProt:
B7EEA5
Q8S7Q0
LinkDB
All DBs
Position
10:complement(join(23255773..23256114,23256211..23256319,23256589..23257121,23257209..23257407,23257504..23257628,23257700..23257783,23257856..23257984,23258100..23258228,23258356..23258502,23258869..23259109,23259622..23259743))
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AA seq
719 aa
AA seq
DB search
MALEISMEGIEARARELGVDLSTVDLDSVTLPAGEDFGILSDDEDLLRIDDPMELEMGFA
NVVVVDNLPVVPPEKFEKLENVIRKIYSQIGAIKEGGLWMPVNPETKKTYGYCFIEYNTP
QEAELAREKTNGYKLDKSHIFAVNMFDDFDKYMKVPDEWMPAEIKPYTPGENLQKWLADE
KARDQFVIRAGTFTEVYWNDARQKMPELVFQKQYWTDSFIQWSPLGTYLATVHRQGSQVW
GGDDKFERLMRFAHAQVKLIDFSPGEKYLVTYSSHEPSNPRDTHRVVLNIFDVRTGKVMR
DFKGSADEFSASGNISVSGVSWPIFRWGGGKDDKYFARLGKNVISVYETETFSLLDKKSL
KVENVVDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPGKEELRQKNLFSVSDCKMYWQ
NSGEYLAVQVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF
AVIHGDGPKPDISFYSMKTSNNISRVSKLTTLKGKQANALFWSPGGRFIVFAGLKGFNGQ
LEFYNVDELETMATGEHFMATDIMWDPTGRYLASAVTSVHEMENGFQIWSFSGKQLYKVS
KDHFFQFLWRPRPPSLLTPEKEDEIAKNLRKYSKKYEQEDQDAFNQLSEQERKRRKQLQE
EWEGWVAKWKQLHEEERPYRMELRDGEASDDEEEYDTKEVEIEEEVDVQEEVPFELDQE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggcgctagaaatctccatggaaggcatcgaagcgcgggcgcgggagcttggggtcgac
ctctccaccgtcgatctcgactccgtcaccctccccgccggcgaggacttcggcatcctc
agtgacgatgaggatttacttcggattgatgaccctatggagcttgaaatggggtttgct
aacgttgttgtcgtggacaacctgcccgttgttccaccagagaagtttgagaagttggag
aacgtcatacgcaagatctacagtcaaattggtgcgatcaaagaaggtggtctttggatg
cctgtaaacccagagacaaagaagacatacggttactgcttcatcgagtataatacccca
caggaagctgagcttgctagggaaaagacaaatgggtacaagctcgacaagtctcacatc
tttgcagttaacatgtttgatgactttgacaagtacatgaaagttccagacgaatggatg
cctgctgaaattaagccatacactcctggagagaacttgcaaaaatggctggctgatgag
aaggcccgggaccaatttgttatccgtgctggtactttcactgaagtttactggaatgat
gcaaggcagaagatgcctgaacttgtgttccaaaagcagtactggacagacagttttatt
cagtggtcccctcttggaacatacttggcaacagtgcataggcagggctcccaggtgtgg
ggtggcgacgataagtttgagcgtctaatgcgatttgctcatgcacaggtgaaactgatt
gacttctcccctggtgagaaatatttggtcacatatagtagccacgagcccagcaaccct
agagacactcatagggttgttcttaatatctttgatgtgaggactggcaaagtgatgcgc
gactttaaaggaagtgctgatgaattcagtgccagtggaaatatcagtgtttctggtgtt
tcatggcctattttcagatggggtggtggaaaagacgataaatattttgcaaggcttggg
aagaatgttatatctgtctatgagactgaaacattctcccttcttgataagaaatctctg
aaggttgagaatgttgtcgacttctgctggtctccaactgatccaatcatagcccttttt
gtccctgagttgggtggaggaaaccagcctgcaagggtgagccttgtgcaaattcctggc
aaagaggagctgcggcagaaaaaccttttcagtgtcagtgattgcaagatgtactggcag
aacagtggagaatatcttgctgtccaggttgatagatacacaaaaaccaagaagagtact
tacactggatttgagctttttagaattaaggaaagggacatacccattgaggttcttgaa
ttggacaacaagaacgataagatcattgcctttgcatgggagcccaaaggtcaccgcttt
gctgttattcatggtgatggccctaagcctgatataagcttctactccatgaaaacatcc
aacaacatcagtcgtgtgtccaagctcaccactctcaagggcaagcaggctaatgcattg
ttctggtctcctggtggaagattcattgttttcgctggtctgaagggctttaatgggcag
ctggagttttacaatgttgatgagcttgagacgatggcaacgggtgaacatttcatggct
actgacattatgtgggatcctactggaagatatcttgcatctgcagttacctcagtccat
gaaatggagaatggtttccaaatatggtctttcagtggcaagcaactttacaaggtgtca
aaggaccacttctttcagttcctgtggcgtccgagaccaccgtcgctgctgacccctgaa
aaggaagacgagattgcgaagaacctgaggaagtacagcaagaagtacgagcaagaggat
caggatgccttcaaccagctgagcgagcaggaacgcaagaggcggaagcagcttcaggag
gaatgggaaggatgggttgccaagtggaagcagctgcacgaggaagagagaccatacagg
atggagctcagagacggggaggccagtgacgatgaggaagagtacgacaccaaggaagtt
gagattgaagaggaggtagacgtccaagaagaagttccattcgagctggatcaggagtga
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