KEGG   Oryza sativa japonica (Japanese rice): 4349526
Entry
4349526           CDS       T01015                                 
Name
(RefSeq) THO complex subunit 4A isoform X1
  KO
K12881  THO complex subunit 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03013  Nucleocytoplasmic transport
osa03015  mRNA surveillance pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4349526
  09122 Translation
   03013 Nucleocytoplasmic transport
    4349526
   03015 mRNA surveillance pathway
    4349526
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4349526
   03041 Spliceosome [BR:osa03041]
    4349526
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     4349526
    TREX complex
     4349526
Spliceosome [BR:osa03041]
 Complex C
  Other components
   EJC/TREX
    4349526
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    4349526
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 4349526
NCBI-ProteinID: XP_015617723
LinkDB
Position
11:join(45681..45836,45914..46012,46409..46477,46570..46754,47813..48005)
AA seq 233 aa
MAADSLDMSLDDLITNKYKRRSRPDPAPSARRFHSRAATRAAAAPYHAITFQAPPTAYTH
PTPVETGTKLHISNLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSD
ALAAVKRYNNVQLDGKPMKLELIGINIEPPPPAMFGFAAPAGYFDFPPKSAEIFSGPGRG
GRGWPRGRGGFGGRGRGHVGRGRGRGDRGSRKISAEDLDADLDKYHAEGMQMS
NT seq 702 nt   +upstreamnt  +downstreamnt
atggcggcggactcgctggacatgtccctcgacgacctcatcaccaacaagtacaagcgc
cgctcccgtccagatccagcgccctctgcccgccgcttccactcccgcgccgccacccgc
gctgctgccgctccctatcacgccatcacctttcaggcgccgcccacggcctacacccac
ccgacgcccgtcgagaccggcaccaagctccacatctccaacctcgactacgccgtctcc
aatgaggacatcaaggaactcttctctgaggttggcgatgtcaagcgttactctattaac
tatgacaagagtggaagatccaagggaactgcagaggttgtattttccagaaaatctgat
gccctggctgctgttaagagatacaacaatgtgcagctggatggcaaacctatgaaactt
gagctcattggtataaatattgagccaccaccacctgctatgtttggtttcgctgcacca
gctggatacttcgattttcctcccaaaagtgctgaaattttcagtggacctggcaggggt
ggaagaggatggcctcggggcaggggtggatttggtgggcgtggtcggggtcatgtgggt
cgtgggcgagggaggggagaccgtggaagtcggaagatttctgctgaagacctggatgct
gacttggacaagtaccatgcggaaggaatgcaaatgagctag

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