KEGG   Oryza sativa japonica (Japanese rice): 4349748
Entry
4349748           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4349748
  09124 Replication and repair
   03420 Nucleotide excision repair
    4349748
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4349748
   03400 DNA repair and recombination proteins [BR:osa03400]
    4349748
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     4349748
  RNA polymerase III system
   RNA polymerase III
     4349748
  RNA polymerase I system
   RNA polymerase I
     4349748
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4349748
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DUF7125 DUF2605 DnaT
Other DBs
NCBI-GeneID: 4349748
NCBI-ProteinID: XP_015616663
UniProt: A0A0P0XYM3
LinkDB
Position
11:complement(join(2060646..2060771,2061302..2061415,2061647..2061823,2062568..2063161))
AA seq 336 aa
MSHSSPYQQSFTTIESAESATAATSIETAESTTAARDVSPPPAAAPAARDVSPPAAASAA
RDVSPPPAAARDVSPPSAAHDVSPPAAVSAPPPAVVPAAARDAPPPAVAMAAEMEVDDVD
VHEVPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKP
GIERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSR
AREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRML
ETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF
NT seq 1011 nt   +upstreamnt  +downstreamnt
atgagtcactcctccccctaccagcaatccttcacgacaatagaatcggctgagagcgcg
accgccgccacctcaatagaaaccgccgagagcaccaccgccgcccgcgacgtttcccct
cctcccgccgccgcccccgccgcccgcgacgtttcccctcccgccgccgcctccgccgca
cgcgacgtttcccctcctcctgccgccgcccgcgacgtttcccctccctccgccgcacac
gacgtttcccctcccgccgctgtctccgcccctcctcctgccgtcgtccccgctgctgcg
cgcgacgctccccctcccgccgtcgccatggcggcggagatggaagtcgacgacgtcgac
gtgcatgaggtccccgaatgcatagcatcgatgatcgaccgcggcagcgtggagagccac
cgcctgttcctggcgcgccggacggcgatggagatgctccgcgaccgcgggtacagcgtg
ccggaggccgagatcgcccgcaccctccctgagttccgcgcctggtgggctgagaagccc
gggatcgaacgcctcgccttcaccaccaccctcgtctccgacccctccaagaaggtacaa
cttgtattctgtccaccagagcctgtcaaaatcgcaactatccgagagatatatctccaa
acaaaagaagagaacttgtccaggcttgttctgatactgcagagcaaaatattatctaga
gctagagaggctatcaaggagatctttaaatttaaagtggacatattccaggccacagat
ttactggtaaacattactaagcatgtcctgaaacccaagcatgaagtgttgagtgcagat
caaaaggccaagctcctcaaggaatacaatgtggaagactcacagttgccacgcatgcta
gagactgatgctgttgctcgctactatggctttgacaagggaaccgtggttaaagttata
tatgacggtgaacttactgggaagcgtgtggcataccgatgcgtcttctga

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