Oryza sativa japonica (Japanese rice): 4349923
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Entry
4349923 CDS
T01015
Name
(RefSeq) cleavage stimulating factor 64
KO
K14407
cleavage stimulation factor subunit 2
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4349923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4349923
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
4349923
U7-dependent histone pre-mRNA processing factors
4349923
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
RRM_10
DUF4660
Motif
Other DBs
NCBI-GeneID:
4349923
NCBI-ProteinID:
XP_015617006
UniProt:
Q0IU87
Q53PI0
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All DBs
Position
11:join(3844491..3844536,3844923..3845001,3845460..3845634,3846756..3846789,3846903..3847141,3847234..3847311,3847535..3847570,3847662..3848084,3848344..3848589,3848814..3848945)
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AA seq
495 aa
AA seq
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MAAAAPAGAQNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEY
KDEETALSARRNLQGYEINGRQLRVDFAENGRNADRNREKGRGGPGMASSVDTQKQLAGT
PVVGDTGLHQPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSK
HQLYEIMSELKSLTSQNKDVANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAKSQQPSS
SLAQSSSHISEPFPQPDAMISSVPRPSASLPNPNVLQDPSAQLHNFPQYPHSSQPAGTIF
PHGSQSGVGIHPPIVSQLLGASSSVPPLPLATSGSLISQVQPPFMPHHPRPPAMPAGMQQ
LPLTHPHVPQVPAIPDIAQKEMRFPEQANRSTEFAHHPKLRKLEDGTSTPGIVNNNPAVY
PAPSQGMLPGGPSGSYNSAAVSFQQPENEVPQLTPDVESALLQQVLQLTPEQLSSLPVEQ
QQQVIQLQKMLSAGK
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcggcccccgccggcgcccagaaccgctgcgtcttcgtcgggaacattcct
tacgatgcgacggaggagcagctcgtgcagatttgcgaggaagtcggccctgtggtctca
ttcagattggttattgataaagaaacagggaagccaaagggttatgggttttgtgagtac
aaggatgaggagactgctctaagtgcacgccggaaccttcaaggttatgaaattaatggc
cgtcagttacgtgttgattttgctgaaaatgggaggaatgctgacagaaacagagaaaag
ggtcgtggaggacctggaatggcatccagtgttgatactcagaaacaattagctgggact
ccggttgtaggcgatacaggtcttcatcagccagttggtcttccatcggctattcatgct
gcatctgtgatggctggtattcttggaggatctcaaactgcaaatgttcaaaatggttta
cctgtccagtatgggcttggaaatgaccctcttactcattatttggccagaatgtcaaag
caccagttgtatgaaatcatgtctgagttgaagtccctaactagtcaaaataaggatgtt
gccaacaaactgctgcaaggaattccacagctgtcaaaggccctatttcagtcacaaata
atgcttggaatggtgacgccccagatgatgcagatggcaaagagccaacagccctctagc
tccttggcacaatcatcatctcacataagcgaaccatttccacagccagatgctatgata
tcaagtgttccaagaccttctgcaagcttgccaaacccaaatgtcctgcaggacccttct
gcacagctgcataattttcctcagtatccgcattcatctcagcctgcgggcacaatattt
ccacatggaagtcagtctggggtgggcatacatcctccaattgtatctcaactccttggt
gcctcttccagtgttcctcctctaccccttgctacctcaggaagcctgatatcgcaggtt
cagcccccatttatgccacatcaccctaggccaccagctatgccagcgggtatgcaacaa
ctaccattgactcatccacatgttccccaggtacctgctatacctgatatagcacagaag
gaaatgaggtttcctgagcaagcaaatcgttcgacggagtttgctcatcatccaaagttg
cgaaaattggaggatggaacatccacacctggaattgtaaacaacaatccagctgtttat
cctgctccatcccaaggaatgctccctggtggaccatcagggagctataattctgctgct
gttagcttccagcagccagagaacgaagtgcctcagctcacacccgatgttgagtcggct
cttctgcagcaagtcctacaactgacacctgagcagcttagttcgttgccagtagagcaa
caacagcaggtgattcagcttcaaaagatgctatcggctggtaaataa
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